View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7313_low_11 (Length: 331)

Name: NF7313_low_11
Description: NF7313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7313_low_11
NF7313_low_11
[»] chr2 (1 HSPs)
chr2 (20-317)||(37839082-37839380)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 37839082 - 37839380
Alignment:
Q  20 gcactagtctttaatttttagcacacaccaatttttgtggagtgcgattattttctatggttctcaattt-gttttcatgaaaaggagttggggattcaa 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||   |    
T  37839082 gcactagtccttaatttttagcacacaccaatttttgtggagtgcgattattttctatgcttctcaattttgttttcatgaaaaggagttggggataaca 37839181  T
Q  119 aacatcaagtcccacactctaccctgcagaacaataaagatcgtatagtcattgttagggggtgacacaacttattatgtttccttcaatcaaatgccct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37839182 aacatcaagtcccacactctaccctgcagaacaataaagatcgtatagtcattgttagggggtgacacaacttattatgtttccttcaatcaaatgccct 37839281  T
Q  219 aacttaattagaaaccaattcattgaagaactttgtgccgtgtcactttagggtctgacctgaaacccacatgcagttccttttatttactctctgagt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37839282 aacttaattagaaaccaattcattgaagaactttgtgccgtgtcactttagggtctgacctgaaacccacatgcagttccttttatttactctctgagt 37839380  T

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