View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7313_low_12 (Length: 315)

Name: NF7313_low_12
Description: NF7313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7313_low_12
NF7313_low_12
[»] chr4 (5 HSPs)
chr4 (116-295)||(11695607-11695782)
chr4 (196-294)||(11675138-11675236)
chr4 (196-294)||(11683417-11683515)
chr4 (196-287)||(11701472-11701563)
chr4 (16-50)||(11695510-11695544)
[»] scaffold0294 (1 HSPs)
scaffold0294 (218-295)||(15781-15858)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 116 - 295
Target Start/End: Original strand, 11695607 - 11695782
Alignment:
Q  116 tgacggagtttttggctcaacattaatcatatcaaatacataaacacaaactcaaactcattttcacgaagnnnnnnnnngtgaattattgaacaggttt 215  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||  ||||||||||||| |||          ||||||||||||| ||||||    
T  11695607 tgacggagtttttggctcaacatcaatcatatcaaatacataaacacatac--aaactcattttcatgaa--aaaaaaaagtgaattattgaataggttt 11695702  T
Q  216 gtttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaa 295  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11695703 gtttgatggcagaatccaacgaagtgttgttagaagctcagttagctgttgttgatggagtcgttgactacagaggacaa 11695782  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 11675138 - 11675236
Alignment:
Q  196 gtgaattattgaacaggtttgtttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggaca 294  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||| || ||||||    
T  11675138 gtgaattattgaataggtttcattgatggcagaatccaacgaagtgttgttagaacctcagttagctcttgttgatggcgtcgttgactgcaaaggaca 11675236  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 11683417 - 11683515
Alignment:
Q  196 gtgaattattgaacaggtttgtttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggaca 294  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||| || ||||||    
T  11683417 gtgaattattgaataggtttcattgatggcagaatccaacgaagtgttgttagaacctcagttagctcttgttgatggcgtcgttgactgcaaaggaca 11683515  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 11701472 - 11701563
Alignment:
Q  196 gtgaattattgaacaggtttgtttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactaca 287  Q
    ||||||||||||| ||||||  ||||||| ||||||||| |||||||||||||||||| | ||| || |||||||||| |  ||||||||||    
T  11701472 gtgaattattgaataggtttcattgatggaagaatccaatgaagtgttgttagaagctcaattatctcttgttgatggcgctgttgactaca 11701563  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 11695510 - 11695544
Alignment:
Q  16 gacatcattgttcaataaaatatatttctctacct 50  Q
    |||||||||||||||||||||||||||||||||||    
T  11695510 gacatcattgttcaataaaatatatttctctacct 11695544  T

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Target: scaffold0294 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 15781 - 15858
Alignment:
Q  218 ttgatggcagaatccaacgaagtgttgttagaagctgagttagctgttgttgatggagtcgttgactacagaggacaa 295  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  15781 ttgatggcagaatcaaacgaagtgttgttagaagctgaattagctactgttgatggagtcgttgactacagaggacaa 15858  T

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