View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7313_low_16 (Length: 250)
Name: NF7313_low_16
Description: NF7313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7313_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 40965290 - 40965521
Alignment:
| Q |
1 |
aaagaaaccatctttcatgatagcattgctttagatgtatgggacgagcttggcccatatgtattccctccaaatataaatcagtaatattttcatatca |
100 |
Q |
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| T |
40965290 |
aaagaaattatctttcatgatagcattgctttagatgtatgggacgagcttggcccatatgtattccctccaaatataaatcagtaatattttcatatca |
40965389 |
T |
|
| Q |
101 |
catcacactttgtcctttctgagaaaaaccgaatggatttgattaaatcttcaaccgttcaaccgtggcgaattcatccatcatcgccacttcccaccat |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
40965390 |
catcactctttgtcctttctgagaaaaaccgaatggatttgattaaatcttcaaccgttcaaccgcggcgaattcctccatcatcgccacttcccaccat |
40965489 |
T |
|
| Q |
201 |
tactaggtctatgaattgcttctatgctcctt |
232 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
40965490 |
tactaggtctatgaattgcttctatgttcctt |
40965521 |
T |
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