View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7313_low_3 (Length: 627)
Name: NF7313_low_3
Description: NF7313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7313_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 3621472 - 3621088
Alignment:
| Q |
13 |
attctacgtgttaacgatgaattatgctaacatttgttctcttcctaattcagtaatttctgaactactactacacagtccatggttataaactgcagtc |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621472 |
attctacgtgttaacgataaattatgctaacatttgttctcttcctaattcagtaatttctgaactactactacacagtccatggttataaactgcagtc |
3621373 |
T |
|
| Q |
113 |
cacaatcgcgaatgcagtcacaatataaaggattttgactgtgttttcactcaatataaataagtttgtagtctaaccgcaaccgcaatttaaaaccatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3621372 |
cacaatcgcgaatgcagtcacaatataaaggattttgactgtgttttcacacaatataaagaagtttgtagtctacccgcaaccgcaatttaaaaccatg |
3621273 |
T |
|
| Q |
213 |
ctagagctatatgaaaatataac-aaaacaatattcaaattgacctataatcaaattaaacaaaggtccaaaaccaatataaacaaacaccctttataag |
311 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621272 |
ctagagctatatgaaaatataacaaaaacagtattcaaattgacctataatcaaattaaacaaaggtccaaaaccaatataaacaaacaccctttataag |
3621173 |
T |
|
| Q |
312 |
caaagcatgatagctatgcttagcaacaatatgttttgctttgaacaaagttataatatatactatacctagttttccataattttctcaactac |
406 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621172 |
caaagcatgatagct----------acaatatgttttgctttgaacaaagttataatatatactatacctagttttccataattttctcaactac |
3621088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 463 - 611
Target Start/End: Complemental strand, 3621031 - 3620883
Alignment:
| Q |
463 |
tggttttgagaattgaatgaactaacttccttatcaggggcacattcttcatcattacaatcagactcagaagaagctctaacaatgaacatgcatgaac |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621031 |
tggttttgagaattgaatgaactaacttccttatcaggggcacattcttcatcattacaatcagactcagaagaagctctaacaatgaacatgcatgaac |
3620932 |
T |
|
| Q |
563 |
ttctcttgttaatcttttgttgcttcaaggagaatttccttgttgaaaa |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3620931 |
ttctcttgttaatcttttgttgcttcaaggagaatttccttgttgaaaa |
3620883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University