View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7313_low_7 (Length: 464)
Name: NF7313_low_7
Description: NF7313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7313_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 31082607 - 31083050
Alignment:
| Q |
18 |
gtattgagacaaatgtgcttagattttaatttgattttcagtttcaaattatttgttgtttgtttaaacgcacatttggtcattcgattatgacttattc |
117 |
Q |
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| T |
31082607 |
gtattgagacaaatgtgcttagattttaatttgattttcagtttcaaattatttgttgtttgtttaaacgcacatttggtcattcgattatgacttattc |
31082706 |
T |
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| Q |
118 |
attaatgacgtgactcggcttatgtgctacattgaatatccatgcaagaaacaaaaaggctacataagtgttgtcacataatcagcgtatatgaagcata |
217 |
Q |
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| T |
31082707 |
attaatgacgtgactcggcttatgtgctacattgaatatccatgcaagaaacaaaaaggctacataagtgtcgttacatcatcagcgaatatgcaacata |
31082806 |
T |
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| Q |
218 |
tgt--aaatgatactaaaatgttacagaaatgatacatt-nnnnnnnntgaactagtgaaccaataaaccaatttttaaaataaggggacaaaacttcac |
314 |
Q |
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| T |
31082807 |
tgtaaaaatgatactaaaatgtgatagaaatgatacattaaaaaaaaatgaactagtgaaccaataaaccaaattttaaaataaggggacaaaacttcac |
31082906 |
T |
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| Q |
315 |
nnnnnnnnaaaataagggaataaaaagtgcatttaaacttgagtttatttagtaaaagtaacaaaggtccctgtagcttaaaccctttgaacctggtatg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||| |
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| T |
31082907 |
ttttttttaaaataagggaataaaaagtgcatttaaacttgagtttatttagtaaaagtaacaaagatccctgcagctt-aaccctttgaacccggtatg |
31083005 |
T |
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| Q |
415 |
agagtgatcatcgaatcgaaaatgcaataactgattttcattgca |
459 |
Q |
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| T |
31083006 |
agagtgatcatcgaatcgaaaatgcaataactgattttcattgca |
31083050 |
T |
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