View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7313_low_8 (Length: 413)
Name: NF7313_low_8
Description: NF7313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7313_low_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 19460449 - 19460845
Alignment:
| Q |
17 |
catcacccgacaggtaggattgtaggaattttctctactggtatgttgagatctctcaccacccgctgagaaataaagttgtgggttgctcctctagtcc |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19460449 |
catcacccgataggtaggattgtaggaattttctctactggtatgttgagatctctcaccacccgctgagaaataaagttgtgggttgctccactagtcc |
19460548 |
T |
|
| Q |
117 |
actgtcaattaggattgtcaccacacttttcagaaaagtaccccaagtttgagttctctctccggagtaagccctaccatgctttgaatgtctaacttca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19460549 |
actgtcaattaggattgtcaccacacttttcagaaaagtaccccaagtttgagttctctctccggagtaagccctaccatgctttgaatgtctaacttca |
19460648 |
T |
|
| Q |
217 |
ccattctctcattcaaagaaccctcgagtccatttttctctagctccccccttctactccctctaattccttcacaatcatcaccttgaaatgttgtttt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19460649 |
ccattctctcattcaaagaaccctcgagtccatttttctctagctccccccttctactccctctaattccttcacaatcatcaccttgaaatgctgtttt |
19460748 |
T |
|
| Q |
317 |
acaaacatgcgtcgatgtgaattttttattacaagtgaagtagagttcctccttctctcccaatattctccttccgaaatagatcaaatcctcttcc |
413 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19460749 |
acaaacatgtgtcgatgtgaattttttattacaagtgaagtagagttcctccttctcttccaatattctccttctgaaatagatcaaatcctcttcc |
19460845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 39 - 372
Target Start/End: Complemental strand, 10193115 - 10192773
Alignment:
| Q |
39 |
taggaattttctctactggtatgttgagatctctcaccacccgctgagaaataa----agttgtgggtt-gctcctctagtccactgtcaattaggattg |
133 |
Q |
| |
|
||||||| | ||||||||||||| |||||||||| |||| |||||||||||| ||||||||||| ||| | ||| ||||||| ||||||||||| |
|
|
| T |
10193115 |
taggaatgtactctactggtatgctgagatctctgaccaattgctgagaaataattaaagttgtgggtttgcttcactattccactggtaattaggattg |
10193016 |
T |
|
| Q |
134 |
tcaccacacttttcagaaaagtaccccaa-gtttgagttctctctccggagtaagccctaccatgctttgaatgtctaacttcaccattctctcattcaa |
232 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| | |||| ||||||||||||||| |||||||||||| | |||||||||||| |||||||||| |
|
|
| T |
10193015 |
tcaccgcacttttcagaaaagtaccccaaagtttgagtgccctcttcggagtaagccctactatgctttgaatggccaacttcaccattttctcattcaa |
10192916 |
T |
|
| Q |
233 |
agaaccctcgagtc---catttttctctagct-ccccccttctactccctctaa---ttccttcacaatcatcaccttgaaatgttgttttacaaacatg |
325 |
Q |
| |
|
|||| ||| | || |||||| |||||||| |||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
10192915 |
agaa--ctcaactccttcattttgctctagctcccccccttctactccctcgaattcttccttcacaatcatcaccatgaaa---tgttttacaaacatg |
10192821 |
T |
|
| Q |
326 |
cgtcgatgtgaa-ttttttattacaagtgaagtagagttcctccttct |
372 |
Q |
| |
|
| | |||||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
10192820 |
tgaaggtgtgaatttttttatcacaagtgaagcagagttcctccttct |
10192773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University