View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7313_low_9 (Length: 388)
Name: NF7313_low_9
Description: NF7313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7313_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 53 - 372
Target Start/End: Complemental strand, 38304471 - 38304157
Alignment:
| Q |
53 |
taactcttggtttcacttttttgtcttttatcagccatctcattatgagaaatcaatagcaattccattggtattcttctccaatctaccaccaccttca |
152 |
Q |
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| T |
38304471 |
taactcttggtttcacttttttgtcttttatcagccatctcattatgagaaatcaatagcaattccaatagtattcttctccaatctaccaccaccttca |
38304372 |
T |
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| Q |
153 |
tcgnnnnnnnnctaattaaaacaccatcaatggctacttaaaatcaaattttcagccaacctctccataatagaacatcactactcgccgcgggacacaa |
252 |
Q |
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| T |
38304371 |
tcgttttttttctaattaaaacaccatcaatagctacttaaaatcaaattttcagccaacctctccataatagaacatcactactcgccgcgggacacaa |
38304272 |
T |
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| Q |
253 |
ccaacccatatacatcgccttccataccatgaacgtcaccaagttcctaccccacctcgcatcgtcgtatcgtatgcgtttcgtactacaggaatctcat |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
38304271 |
ccaacccatatacatcgccttccataccatgaacgtcaccaagttcctaccccacctcgcatcgtc-----gtatgcgtttcgtactgcaggaatctcat |
38304177 |
T |
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| Q |
353 |
acaccgtcgaatctgtgatg |
372 |
Q |
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| T |
38304176 |
acaccgtcgaatctgtgatg |
38304157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 44166466 - 44166540
Alignment:
| Q |
164 |
ctaattaaaacaccatcaatggctacttaaaatcaaattttcagccaacctctccataatagaacatcactactc |
238 |
Q |
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| T |
44166466 |
ctaattaaaacaccatcaataactacttaagctcaaatttgcagccaacctctccataacagaacatcactactc |
44166540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 44166615 - 44166659
Alignment:
| Q |
236 |
ctcgccgcgggacacaaccaacccatatacatcgccttccatacc |
280 |
Q |
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| T |
44166615 |
ctcgccgcgggacacaaccaacgcatatacaccgccttccatacc |
44166659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 44166387 - 44166441
Alignment:
| Q |
94 |
attatgagaaatcaatagcaattccattggtattcttctccaatctaccaccacc |
148 |
Q |
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|||||||||||| |||||||||| || |||| ||||||||||||| ||||||||| |
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| T |
44166387 |
attatgagaaattaatagcaatttcaatggtcttcttctccaatcaaccaccacc |
44166441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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