View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7314_low_1 (Length: 455)

Name: NF7314_low_1
Description: NF7314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7314_low_1
NF7314_low_1
[»] chr7 (8 HSPs)
chr7 (16-455)||(18535895-18536335)
chr7 (18-347)||(12315052-12315380)
chr7 (71-342)||(1723576-1723846)
chr7 (66-210)||(13796337-13796481)
chr7 (32-135)||(39702856-39702959)
chr7 (377-455)||(12315477-12315557)
chr7 (32-101)||(48520172-48520241)
chr7 (32-102)||(3568757-3568827)
[»] chr4 (6 HSPs)
chr4 (18-347)||(18810821-18811150)
chr4 (71-342)||(13757282-13757551)
chr4 (32-156)||(52374500-52374624)
chr4 (32-95)||(19111865-19111928)
chr4 (32-154)||(43593320-43593440)
chr4 (420-455)||(18810686-18810721)
[»] chr2 (10 HSPs)
chr2 (16-294)||(44481547-44481825)
chr2 (129-347)||(24079190-24079409)
chr2 (32-147)||(5783206-5783321)
chr2 (32-147)||(25417326-25417441)
chr2 (286-347)||(44481999-44482060)
chr2 (377-455)||(44482156-44482236)
chr2 (377-455)||(24079013-24079093)
chr2 (34-154)||(29468447-29468567)
chr2 (36-95)||(13364310-13364369)
chr2 (74-154)||(25546396-25546475)
[»] scaffold0054 (1 HSPs)
scaffold0054 (66-342)||(28420-28691)
[»] chr3 (3 HSPs)
chr3 (71-329)||(54076944-54077198)
chr3 (32-154)||(7567212-7567334)
chr3 (261-342)||(9783490-9783569)
[»] scaffold0159 (1 HSPs)
scaffold0159 (32-147)||(36669-36784)
[»] chr6 (10 HSPs)
chr6 (32-154)||(20025461-20025583)
chr6 (32-154)||(18767446-18767567)
chr6 (32-162)||(23160483-23160610)
chr6 (32-154)||(18715517-18715639)
chr6 (32-136)||(31569536-31569640)
chr6 (32-154)||(20881694-20881814)
chr6 (32-154)||(21683413-21683533)
chr6 (32-154)||(15906791-15906913)
chr6 (35-102)||(21393091-21393158)
chr6 (32-94)||(14463735-14463797)
[»] chr1 (7 HSPs)
chr1 (32-135)||(7487119-7487222)
chr1 (32-154)||(18504984-18505106)
chr1 (32-154)||(19193512-19193634)
chr1 (35-150)||(42958395-42958510)
chr1 (32-102)||(26703841-26703911)
chr1 (32-154)||(46352124-46352245)
chr1 (36-154)||(46757739-46757857)
[»] chr5 (6 HSPs)
chr5 (32-154)||(22545511-22545631)
chr5 (32-154)||(42882766-42882888)
chr5 (71-154)||(32726635-32726717)
chr5 (32-95)||(35329427-35329490)
chr5 (32-102)||(38925684-38925754)
chr5 (38-95)||(35329035-35329092)
[»] scaffold0214 (2 HSPs)
scaffold0214 (32-154)||(21955-22077)
scaffold0214 (32-135)||(28963-29066)
[»] chr8 (5 HSPs)
chr8 (40-154)||(22932295-22932409)
chr8 (32-156)||(7964642-7964766)
chr8 (35-154)||(8223976-8224095)
chr8 (32-95)||(44967665-44967728)
chr8 (32-154)||(16046835-16046957)
[»] scaffold0590 (1 HSPs)
scaffold0590 (35-102)||(9264-9331)
[»] scaffold0557 (1 HSPs)
scaffold0557 (32-91)||(6679-6738)
[»] scaffold0041 (1 HSPs)
scaffold0041 (32-135)||(31988-32091)
[»] scaffold0283 (1 HSPs)
scaffold0283 (32-95)||(13799-13862)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 455
Target Start/End: Original strand, 18535895 - 18536335
Alignment:
Q  16 gaagttatttacgatttacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18535895 gaagttatttacgatttacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatgcgagtgggtttc 18535994  T
Q  116 acgaagacaataaatctttcccaccgctaacacaatttataaaaacctttattgattacagtttaatctttttgcatttgtctaatattcacccattctc 215  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  18535995 acgaagacaataaatctttcctaccgctaacacaatttataaaaacctttattgattagagtttaatctttttgcatttgtctaatattcacccattcac 18536094  T
Q  216 catctctcccattaaaagaaagctctctctttacccaatctacttctctcttattgcatttgtataatcatttttatccctactattgagtttccgcttt 315  Q
    ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18536095 catctctcctattaaaagaaagctccctctttacccaatctacctctctcttattgcatttgtctaatcatttttatccctactattgagtttccgcttt 18536194  T
Q  316 agtacaccttaatccaagccacaaaaagtttgnnnnnnngtcattttggtggnnnnnnnnnatgtcgtgaattcagtttagcaattttgtnnnnnnnnta 415  Q
    ||||||| |||||| |||||||| ||| ||||       || ||||||||||         |||||||||||||||||||||||||||||        ||    
T  18536195 agtacactttaatcaaagccacacaaaatttgaaaaaaagttattttggtgg-ttttttttatgtcgtgaattcagtttagcaattttgtaaaaaaaata 18536293  T
Q  416 tttt--gtgtttgtaatttaaaaagaaaaagtaagccctcct 455  Q
    ||||  ||||||||||||||||||| ||||||||||||||||    
T  18536294 tttttagtgtttgtaatttaaaaaggaaaagtaagccctcct 18536335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 12315052 - 12315380
Alignment:
Q  18 agttatttacgatttacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  12315052 agttatttacgatttacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatgggagtgggtttcac 12315151  T
Q  118 gaagacaataaatctttcccaccgctaacacaatttataaaaacctttattgattacagtttaatctttttgcatttgtctaatattcacccattctcca 217  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12315152 gaagacaataaatctttcctaccgctaacccaatttataaaaacctttattgattacagtttaatctttttgcatttgtctaatattcacccattctcca 12315251  T
Q  218 tctctcccattaaaagaaagctctctctttacccaatctacttctctcttattgcatttgtataatcatttttatccctactattgagtttccgctttag 317  Q
    |||||||  |||||||||| ||| ||||||| |||||  || ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  12315252 tctctcctgttaaaagaaa-ctccctctttatccaatgcacctctctcttattgcatttgtctaatcatttttatccctactatcgagtttccgctttag 12315350  T
Q  318 tacaccttaatccaagccacaaaaagtttg 347  Q
    ||||| |||||| |||||||||||||||||    
T  12315351 tacactttaatcaaagccacaaaaagtttg 12315380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 71 - 342
Target Start/End: Original strand, 1723576 - 1723846
Alignment:
Q  71 atgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatctttcccaccgctaacacaatttataaaaacctttattga 170  Q
    ||||||||||||||||||||||| |||| ||   | |||||||||||||| ||| ||||||||||| || ||||||||||||||   |||||||||||||    
T  1723576 atgaatatgcatgaaacatgagtaaaatataagggggtgggtttcacgaaaacattaaatctttcctactgctaacacaatttacgtaaacctttattga 1723675  T
Q  171 ttacagtttaat-ctttttgcatttgtctaatattcacccattctccatctctcccattaaaagaaagctctctctttacccaatctacttctctcttat 269  Q
    ||||| |||||| ||||||| ||||||||||| || ||||| ||    |     |  |||||||||||| | ||||||||||||| | | | ||||||||    
T  1723676 ttacaatttaatcctttttgtatttgtctaatctttacccaatcaaagt-----cggttaaaagaaagcaccctctttacccaatttccctatctcttat 1723770  T
Q  270 tgcatttgtataatc---atttttatccctactattgagtttccgctttagtacaccttaatccaagccacaaaaa 342  Q
    ||||||||| |||||    |||||||||||  | ||| |||||||||||||||||| |||||| ||||||| ||||    
T  1723771 tgcatttgtctaatctttttttttatcccttttcttgtgtttccgctttagtacactttaatcaaagccaccaaaa 1723846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 66 - 210
Target Start/End: Complemental strand, 13796481 - 13796337
Alignment:
Q  66 gaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatctttcccaccgctaacacaatttataaaaaccttt 165  Q
    |||| |||||| |||||||||||||||||||||||||  | ||| |||||||||||||| ||||||||||||||| || |||||||| | ||||||||||    
T  13796481 gaaagatgaatctgcatgaaacatgagtgaaatttattggggtgagtttcacgaagacattaaatctttcccacccct-acacaattgacaaaaaccttt 13796383  T
Q  166 attgattacagtttaat-ctttttgcatttgtctaatattcaccca 210  Q
    ||||| |||  |||||| ||||||||||||||||||| || |||||    
T  13796382 attgactaccatttaatgctttttgcatttgtctaatctttaccca 13796337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 39702959 - 39702856
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||||||||| |||||||||||||||| || | |  |||||||| |||||||||||||||| ||||||  | |||||||| | ||||||  ||||||    
T  39702959 tacttagttttgtaatgcatactcatctatctatggaggatgaatatacatgaaacatgagtgacatttatgggggtgggtttgatgaagactttaaatc 39702860  T
Q  132 tttc 135  Q
    ||||    
T  39702859 tttc 39702856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 455
Target Start/End: Original strand, 12315477 - 12315557
Alignment:
Q  377 atgtcgtgaattcagtttagcaattttgtnnnnnnnntatttt--gtgtttgtaatttaaaaagaaaaagtaagccctcct 455  Q
    |||||||||||||||||||||||||||||        ||||||  ||||||||||||||||||| ||||||||||||||||    
T  12315477 atgtcgtgaattcagtttagcaattttgtaaaaaaaatatttttagtgtttgtaatttaaaaaggaaaagtaagccctcct 12315557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 48520172 - 48520241
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaattta 101  Q
    |||||||||||| ||||||||||||||||| || | || || |||||| |||||||||||||||| ||||    
T  48520172 tacttagttttgcgatgcatactcatctatctatggaagattaatatggatgaaacatgagtgaagttta 48520241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 3568757 - 3568827
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttat 102  Q
    ||||| |||||||||||||| ||||||||| || | |  |||||||||||| ||||||||| || ||||||    
T  3568757 tactttgttttgtgatgcatcctcatctatctatggaggatgaatatgcataaaacatgagagacatttat 3568827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 18811150 - 18810821
Alignment:
Q  18 agttatttacgatttacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  18811150 agttatttacgatttacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatgggagtgggtttcac 18811051  T
Q  118 gaagacaataaatctttcccaccgctaacacaatttataaaaacctttattgattacagtttaatctttttgcatttgtctaatattcacccattctcca 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18811050 gaagacaataaatctttcctaccgctaacacaatttataaaaacctttattgattacagtttaatctttttgcatttgactaatattcacccattctcca 18810951  T
Q  218 tctctcccattaaaagaaagctctctctttacccaatctacttctctcttattgcatttgtataatcatttttatccctactattgagtttccgctttag 317  Q
    ||||||| ||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  18810950 tctctcctattaaaaaaaagctccctctttacccaatctacctctctattattgcatttgtctaatcatttttatccctactattgagtttccgttttag 18810851  T
Q  318 tacaccttaatccaagccacaaaaagtttg 347  Q
    ||||| |||||| || ||||||||||||||    
T  18810850 tacactttaatcaaaaccacaaaaagtttg 18810821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 71 - 342
Target Start/End: Original strand, 13757282 - 13757551
Alignment:
Q  71 atgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatctttcccaccgctaacacaatttataaaaacctttattga 170  Q
    ||||||||||||||||||||||| |||| |||  | |||||||||||||| ||| ||||||||||| || ||||||||||||||   |||||||||||||    
T  13757282 atgaatatgcatgaaacatgagtaaaatatatgggggtgggtttcacgaatacattaaatctttcctactgctaacacaatttacgtaaacctttattga 13757381  T
Q  171 ttacagtttaat-ctttttgcatttgtctaatattcacccattctccatctctcccattaaaagaaagctctctctttacccaatctacttctctcttat 269  Q
    ||||  |||||| ||||||| ||||||||||| || ||||| ||    |     |  |||||||||||| | ||||||||||||| | | | ||||||||    
T  13757382 ttactatttaatcctttttgtatttgtctaatctttacccaatcaaagt-----cggttaaaagaaagcaccctctttacccaatttccctatctcttat 13757476  T
Q  270 tgcatttgtataatc--atttttatccctactattgagtttccgctttagtacaccttaatccaagccacaaaaa 342  Q
    ||||||||| | |||   |||||||||||  | ||| |||||||||||||||||| |||||| ||||||| ||||    
T  13757477 tgcatttgtctgatcttttttttatcccttttcttgtgtttccgctttagtacactttaatcaaagccaccaaaa 13757551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 52374500 - 52374624
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    |||||||||||||||||||||||||||||| || | |  | ||||||||||||||||||||||| | ||||  | || ||||| | ||||| | ||||||    
T  52374500 tacttagttttgtgatgcatactcatctatctatggaggacgaatatgcatgaaacatgagtgacagttatgagggttggtttgatgaagatattaaatc 52374599  T
Q  132 tttcccaccgctaacacaatttata 156  Q
    ||| ||| |||||||||| ||||||    
T  52374600 ttttccatcgctaacacattttata 52374624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 19111928 - 19111865
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtga 95  Q
    |||||||||||||||||||||||||||||| || | |  |||||||||||||||||||||||||    
T  19111928 tacttagttttgtgatgcatactcatctatctatggaggatgaatatgcatgaaacatgagtga 19111865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 43593440 - 43593320
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||||||||||||||||| ||||| || || | |  ||||||||||||||||||||||||| | ||||  | |||||||| | |||||| |||||||    
T  43593440 tacttagttttgtgatgcatagtcatcgatctatggaggatgaatatgcatgaaacatgagtgacaattat-agggtgggtttgatgaagac-ataaatc 43593343  T
Q  132 tttcccaccgctaacacaattta 154  Q
     |||||| |  ||||||||||||    
T  43593342 attcccatcattaacacaattta 43593320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 455
Target Start/End: Complemental strand, 18810721 - 18810686
Alignment:
Q  420 gtgtttgtaatttaaaaagaaaaagtaagccctcct 455  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18810721 gtgtttgtaatttaaaaaggaaaagtaagccctcct 18810686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 44481547 - 44481825
Alignment:
Q  16 gaagttatttacgatttacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttc 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44481547 gaagttatttacgatttacttagttttgtaatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatgcgagtgggtttc 44481646  T
Q  116 acgaagacaataaatctttcccaccgctaacacaatttataaaaacctttattgattacagtttaatctttttgcatttgtctaatattcacccattctc 215  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44481647 acgaagacaataaatctttcctaccgctaacacaatttataaaaacctttattgattacaatttaatctttttgcatttgtctaatattcacccattctc 44481746  T
Q  216 catctctcccattaaaagaaagctctctctttacccaatctacttctctcttattgcatttgtataatcatttttatcc 294  Q
    ||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||    
T  44481747 catctctcctattaaaagaaagctccctctttacccgatctacctctctcttattgcatttgtctaatcatttttatcc 44481825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 129 - 347
Target Start/End: Complemental strand, 24079409 - 24079190
Alignment:
Q  129 atctttcccaccgctaacacaatttataaaaacctttattgattacagtttaatctttttgcatttgtctaatattcacccattctccatctctcccatt 228  Q
    |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  24079409 atctttcctaccgctaagacaatttataaaaacctttattgattgcagtttaatctttttgcatttgtctaatattcacccattctccatctcttctatt 24079310  T
Q  229 a--aaagaaagctctctctttacccaatctacttctctcttattgcatttgtataatcatttttatccctactattgagtttccgctttagtacacctta 326  Q
    |  ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||    
T  24079309 ataaaagaaagctccctctttacccaatctacctctctcttattgcatttgtctaatcatttttatccatactattgagtttccgctttagtacacttta 24079210  T
Q  327 atccaagccacaaaaagtttg 347  Q
    ||| |||||| ||||||||||    
T  24079209 atcgaagcca-aaaaagtttg 24079190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 5783321 - 5783206
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||||||||||||||||||||||||||||| | |  |||||||||||||||| |||||||| ||||||  | | || ||| | ||||||||||||||    
T  5783321 tacttagttttgtgatgcatactcatctatatatggaggatgaatatgcatgaaatatgagtgacatttatgggggcggatttgatgaagacaataaatc 5783222  T
Q  132 tttcccaccgctaaca 147  Q
    ||||||| | ||||||    
T  5783221 tttcccatctctaaca 5783206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 25417326 - 25417441
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||| |||||||||||||||||||||| || | |  |||||||||||||||||||||| || | ||||  | |||||||| | ||||||| |||||     
T  25417326 tacttaggtttgtgatgcatactcatctatctatggaggatgaatatgcatgaaacatgagagacagttatgggggtgggtttgatgaagacattaaatt 25417425  T
Q  132 tttcccaccgctaaca 147  Q
    ||||||| ||||||||    
T  25417426 tttcccagcgctaaca 25417441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 44481999 - 44482060
Alignment:
Q  286 tttttatccctactattgagtttccgctttagtacaccttaatccaagccacaaaaagtttg 347  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||    
T  44481999 tttttatccctactattgagtttccgctttaatacactttaatcaaagctacaaaaagtttg 44482060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 455
Target Start/End: Original strand, 44482156 - 44482236
Alignment:
Q  377 atgtcgtgaattcagtttagcaattttgtnnnnnnnntatttt--gtgtttgtaatttaaaaagaaaaagtaagccctcct 455  Q
    |||||||||||||||||||||||||||||        ||||||  ||||||||||||||||||| ||||||||||||||||    
T  44482156 atgtcgtgaattcagtttagcaattttgtaaaataaatatttttagtgtttgtaatttaaaaaggaaaagtaagccctcct 44482236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 455
Target Start/End: Complemental strand, 24079093 - 24079013
Alignment:
Q  377 atgtcgtgaattcagtttagcaattttgtnnnnnnnntatttt--gtgtttgtaatttaaaaagaaaaagtaagccctcct 455  Q
    |||||||||||| ||||||||||||||||        ||||||  ||||||||||||||||||| ||||||||||||||||    
T  24079093 atgtcgtgaatttagtttagcaattttgtaaaaaaaatatttttagtgtttgtaatttaaaaaggaaaagtaagccctcct 24079013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 29468567 - 29468447
Alignment:
Q  34 cttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatctt 133  Q
    |||||||||||||||||||||||| ||| || | |  |||||||| |||||||||||||||  | ||||  | || ||||| | ||||| | ||||||||    
T  29468567 cttagttttgtgatgcatactcatatatttatggaggatgaatatccatgaaacatgagtggcagttatgagggttggtttgatgaagatattaaatctt 29468468  T
Q  134 tcccaccgctaacacaattta 154  Q
    | ||| |||||||||| ||||    
T  29468467 ttccatcgctaacacatttta 29468447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 13364369 - 13364310
Alignment:
Q  36 tagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtga 95  Q
    ||||||||||||||||||||||||||||| | |  ||||||||| || ||||||||||||    
T  13364369 tagttttgtgatgcatactcatctatatatggaggatgaatatgaataaaacatgagtga 13364310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 25546396 - 25546475
Alignment:
Q  74 aatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatctttcccaccgctaacacaattta 154  Q
    ||||| |||||||||||  ||||||||||  |||||||||| |  |||||  |||||||||||||  ||||||||||||||    
T  25546396 aatattcatgaaacatggttgaaatttatg-gagtgggtttgataaagactttaaatctttcccagtgctaacacaattta 25546475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 66 - 342
Target Start/End: Complemental strand, 28691 - 28420
Alignment:
Q  66 gaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatctttcccaccgctaacacaatttataaaaaccttt 165  Q
    |||| |||||| ||||||||||||||||||||||||   | ||| |||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||    
T  28691 gaaagatgaatctgcatgaaacatgagtgaaatttacgggggtgagtttcacgaagacattaaatcttttccactgctaacacaatttacaaaaaccttt 28592  T
Q  166 attgattacagtttaat-ctttttgcatttgtctaatattcacccattctccatctctcccattaaaagaaagctctctctttacccaatctacttctct 264  Q
    ||||| ||| ||||||| ||||||||||||||||||| || | ||| ||   |     || ||||||| ||||||| ||||||||||||| | | |||||    
T  28591 attgactactgtttaatgctttttgcatttgtctaatctttatccaatcaaaa-----ccaattaaaaaaaagctccctctttacccaatttccctctct 28497  T
Q  265 cttattgcatttgtataatcatttttatccctactattgagtttccgctttagtacaccttaatccaagccacaaaaa 342  Q
    |||||||||||||| ||||| |||||||||||  |||||||||| || |||||||||| | |||| ||||||| ||||    
T  28496 cttattgcatttgtctaatcttttttatcccttttattgagttt-cgttttagtacacttcaatcaaagccaccaaaa 28420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 329
Target Start/End: Original strand, 54076944 - 54077198
Alignment:
Q  71 atgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatctttcccaccgctaacacaatttataaaaacctttattga 170  Q
    ||||||||||||||||||||||| |||| ||   | |||||||||||||||||| |||||||||||||  ||||||||||||||   | |||||||||||    
T  54076944 atgaatatgcatgaaacatgagtaaaatatacgggggtgggtttcacgaagacattaaatctttcccattgctaacacaatttacctatacctttattga 54077043  T
Q  171 ttacagtttaat-ctttttgcatttgtctaatattcacccattctccatctctcccattaaaagaaagctctctctttacccaatctacttctctcttat 269  Q
    ||||  |||||| ||||||| ||||||||||| || ||||| ||         ||  |||||||||||| | ||||||||||||| | | ||||||||||    
T  54077044 ttaccatttaatcctttttgtatttgtctaatctttacccaatc-----aaagccggttaaaagaaagcaccctctttacccaatttccctctctcttat 54077138  T
Q  270 tgcatttgtataatcatttttatccctactattgagtttccgctttagtacaccttaatc 329  Q
    ||||||||| ||| | |||||||||||  | ||| |||||||||||||||||| ||||||    
T  54077139 tgcatttgtctaaacttttttatcccttttcttgtgtttccgctttagtacactttaatc 54077198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 7567212 - 7567334
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||| |||| ||||||||||||||||| || |    ||||||||||||||||||||||||| | ||||  | ||||||||   ||||| | ||||||    
T  7567212 tacttaggtttgggatgcatactcatctatctatggtggatgaatatgcatgaaacatgagtgacaattatgggggtgggtttgctgaagatattaaatc 7567311  T
Q  132 tttcccaccgctaacacaattta 154  Q
    |||||||  ||||||| ||||||    
T  7567312 tttcccagtgctaacataattta 7567334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 9783569 - 9783490
Alignment:
Q  261 ctctcttattgcatttgtataatcatttttatccctactattgagtttccgctttagtacaccttaatccaagccacaaaaa 342  Q
    |||||||||||||||||| ||||| |||||| ||||| | |||||||||   |||||||||| |||||| ||||||| ||||    
T  9783569 ctctcttattgcatttgtctaatcctttttaaccctattgttgagtttc--gtttagtacactttaatcgaagccaccaaaa 9783490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 36784 - 36669
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||||||||||||||||||||||||||||| | |  |||||||||||||||| |||||||| ||||||  | | || ||| | ||||||||||||||    
T  36784 tacttagttttgtgatgcatactcatctatatatggaggatgaatatgcatgaaatatgagtgacatttatgggggcggatttgatgaagacaataaatc 36685  T
Q  132 tttcccaccgctaaca 147  Q
    ||||||| | ||||||    
T  36684 tttcccatctctaaca 36669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 20025583 - 20025461
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    |||||||||||||||||||||||||||||| || |||  |||||||| |||| ||||||||||| ||||||  | |||||||| | ||||||| ||||||    
T  20025583 tacttagttttgtgatgcatactcatctatctatgaaggatgaatatacatggaacatgagtgacatttatgggtgtgggtttgatgaagacattaaatc 20025484  T
Q  132 tttcccaccgctaacacaattta 154  Q
    ||||  | | |||||||||||||    
T  20025483 tttcttatctctaacacaattta 20025461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 18767567 - 18767446
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    |||||||||||||||||||||||||||||| || |  | ||||||||||||||||||||||| | ||||| | | |||||||| | ||||||| |||||     
T  18767567 tacttagttttgtgatgcatactcatctatctagggtagatgaatatgcatgaaacatgagtcacattta-cggggtgggtttgatgaagacattaaatt 18767469  T
Q  132 tttcccaccgctaacacaattta 154  Q
    |||| || | |||||||||||||    
T  18767468 tttctcatctctaacacaattta 18767446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 23160610 - 23160483
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    |||||||||||||||||||||||||||||| || | |  |||||||| |||||||||||||||| ||| ||    |||||||| | ||||||  ||||||    
T  23160610 tacttagttttgtgatgcatactcatctatctatggaggatgaatatacatgaaacatgagtgacattaat---ggtgggtttgatgaagactttaaatc 23160514  T
Q  132 tttcccaccgctaacacaatttataaaaacc 162  Q
    ||||||| || ||| |||||||| |||||||    
T  23160513 tttcccatcgttaaaacaatttacaaaaacc 23160483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 18715517 - 18715639
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    |||||||||||||||||||||||||||||| || | |  |||||||||||||||||||||||||   ||||  | || ||||| | ||||| | ||||||    
T  18715517 tacttagttttgtgatgcatactcatctatctatggaggatgaatatgcatgaaacatgagtgatggttatgagggttggtttgatgaagatattaaatc 18715616  T
Q  132 tttcccaccgctaacacaattta 154  Q
    ||| ||| |||||||||| ||||    
T  18715617 ttttccatcgctaacacatttta 18715639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 31569536 - 31569640
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    |||||||||||||||||||||||||| ||| || |||| |||||||| |||| ||||||||||| ||||||  | |||||||| | ||||||  |||||     
T  31569536 tacttagttttgtgatgcatactcatttatctatgaaagatgaatatacatggaacatgagtgacatttatgggggtgggtttgatgaagactttaaata 31569635  T
Q  132 tttcc 136  Q
    |||||    
T  31569636 tttcc 31569640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 20881814 - 20881694
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||||||||||||||| |||||||||| || | |  ||  ||||||||||||||||||||| | ||||  |  ||||||| | ||||| | ||||||    
T  20881814 tacttagttttgtgatgcaaactcatctatctatgtaggat--atatgcatgaaacatgagtgacaattatggggatgggtttgatgaagatattaaatc 20881717  T
Q  132 tttcccaccgctaacacaattta 154  Q
    ||||||| |||||||||||||||    
T  20881716 tttcccaacgctaacacaattta 20881694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 21683413 - 21683533
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||||||||||||||| |||||||||| || | |  ||  ||||||||||||||||||||| | ||||  |  ||||||| | ||||||| ||||||    
T  21683413 tacttagttttgtgatgcaaactcatctatctatgtaggat--atatgcatgaaacatgagtgacaattatggggatgggtttgatgaagacattaaatc 21683510  T
Q  132 tttcccaccgctaacacaattta 154  Q
    |||| || |||||||||||||||    
T  21683511 tttctcatcgctaacacaattta 21683533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 15906913 - 15906791
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    |||||||||||||||||||||||||||||| || | |  ||||||||||||| ||||||||||  | ||||  | || ||||| | ||||| | ||||||    
T  15906913 tacttagttttgtgatgcatactcatctatctatggaggatgaatatgcatgcaacatgagtggcagttatgagggttggtttgatgaagatattaaatc 15906814  T
Q  132 tttcccaccgctaacacaattta 154  Q
    ||| ||| |||||||||| ||||    
T  15906813 ttttccatcgctaacacatttta 15906791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 21393158 - 21393091
Alignment:
Q  35 ttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttat 102  Q
    |||||||||||||||||||||||||||||| | |  ||||||||||||||||||| | ||| ||||||    
T  21393158 ttagttttgtgatgcatactcatctatatatggaggatgaatatgcatgaaacataactgacatttat 21393091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 14463735 - 14463797
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtg 94  Q
    ||||||||||||||| |||||||||||||| || | |  ||||||||||||||||||||||||    
T  14463735 tacttagttttgtgaagcatactcatctatctatggaggatgaatatgcatgaaacatgagtg 14463797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 7487222 - 7487119
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    |||||||||||||||||||||||||||||| || | |  |||||||| |||||||||||||||| ||||||  | |||||||| | ||||||  ||||||    
T  7487222 tacttagttttgtgatgcatactcatctatctatggaggatgaatatacatgaaacatgagtgacatttatgggggtgggtttgatgaagactttaaatc 7487123  T
Q  132 tttc 135  Q
    ||||    
T  7487122 tttc 7487119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 18504984 - 18505106
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||||||| || | ||||||||||||| || | |  |||||||||||| |||||||||||| ||||||  | |||||||| | ||||||| ||||||    
T  18504984 tacttagttttatggtacatactcatctatctatggaggatgaatatgcattaaacatgagtgacatttatgggggtgggtttgatgaagacattaaatc 18505083  T
Q  132 tttcccaccgctaacacaattta 154  Q
    |||| || | |||||||||||||    
T  18505084 tttctcatctctaacacaattta 18505106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 19193634 - 19193512
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||||||||||||||||||||||||||| |   |  |||||||||||||||||||||||||   ||||  |  | ||||| | ||||||| ||||||    
T  19193634 tacttagttttgtgatgcatactcatctatacatagaggatgaatatgcatgaaacatgagtgaccgttatggggattggtttgatgaagacattaaatc 19193535  T
Q  132 tttcccaccgctaacacaattta 154  Q
    ||||||  |||||||||||||||    
T  19193534 tttcccttcgctaacacaattta 19193512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 42958510 - 42958395
Alignment:
Q  35 ttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatcttt 134  Q
    ||||||||||||||||||||| ||||  || | |  ||||||||||||||||||||||||| ||||||  | | |||||| | ||||||| ||||| |||    
T  42958510 ttagttttgtgatgcatactcgtctaactatggaggatgaatatgcatgaaacatgagtgacatttatgggggcgggtttgatgaagacattaaatattt 42958411  T
Q  135 cccaccgctaacacaa 150  Q
    |||| | |||||||||    
T  42958410 cccatctctaacacaa 42958395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 26703841 - 26703911
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttat 102  Q
    |||||||||||||||||||||||||||| | || | |  ||||||||||||||||||||||||| ||||||    
T  26703841 tacttagttttgtgatgcatactcatctttctatggaggatgaatatgcatgaaacatgagtgacatttat 26703911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 46352124 - 46352245
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||| |||||||||||||| ||||||||| || | |  |||||||||||| ||||||||| || ||||||  | ||||| || | |||||| |||||||    
T  46352124 tactttgttttgtgatgcatcctcatctatctatggaggatgaatatgcataaaacatgagagacatttatgggggtgggattgatgaagac-ataaatc 46352222  T
Q  132 tttcccaccgctaacacaattta 154  Q
     ||| || |||||||||||||||    
T  46352223 attctcagcgctaacacaattta 46352245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 46757857 - 46757739
Alignment:
Q  36 tagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatctttc 135  Q
    ||||||||| |||||||||||||||| || | || ||||||||||||||||||| ||| | |||||   | || ||||| | ||||||| ||||||||||    
T  46757857 tagttttgttatgcatactcatctatctagggaagatgaatatgcatgaaacataagtcacatttacgggggtaggtttgatgaagacattaaatctttc 46757758  T
Q  136 ccaccgctaacacaattta 154  Q
     ||   |||||||||||||    
T  46757757 tcataactaacacaattta 46757739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 22545631 - 22545511
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||||||||||||||| |||||||||| || | |  ||  ||||||||||||||||||||| | ||||  |  | ||||| | ||||||| ||||||    
T  22545631 tacttagttttgtgatgcaaactcatctatctatgtaggat--atatgcatgaaacatgagtgacaattatggggataggtttgatgaagacattaaatc 22545534  T
Q  132 tttcccaccgctaacacaattta 154  Q
    ||||||| |||||||||||||||    
T  22545533 tttcccaacgctaacacaattta 22545511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 42882888 - 42882766
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||||||||||||||||| |||||||| || | |  ||||||||||||||||||||||||  | ||||  | || ||||| | ||||| | ||||||    
T  42882888 tacttagttttgtgatgcataatcatctatctatggaggatgaatatgcatgaaacatgagtggcagttatgagggttggtttgatgaagatattaaatc 42882789  T
Q  132 tttcccaccgctaacacaattta 154  Q
    ||| ||| |||||||||| ||||    
T  42882788 ttttccatcgctaacacatttta 42882766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 32726717 - 32726635
Alignment:
Q  71 atgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatctttcccaccgctaacacaattta 154  Q
    ||||||||||||||||||||||||| ||||||  | |||| ||| | |||| || |||||||||| || |||||||||||||||    
T  32726717 atgaatatgcatgaaacatgagtgacatttat-ggggtggttttgatgaagccattaaatctttctcatcgctaacacaattta 32726635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 35329427 - 35329490
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtga 95  Q
    |||||||||||||||||||||||||| ||  || | |  |||||||||||| ||||||||||||    
T  35329427 tacttagttttgtgatgcatactcatttacctatggaggatgaatatgcataaaacatgagtga 35329490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 38925684 - 38925754
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttat 102  Q
    ||||| |||||||||||||| ||||||||| || | |  |||||||||||| ||||||||| || ||||||    
T  38925684 tactttgttttgtgatgcatcctcatctatctatggaggatgaatatgcataaaacatgagagacatttat 38925754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 35329035 - 35329092
Alignment:
Q  38 gttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtga 95  Q
    |||||||||||||||||||| ||  || | |  |||||||||||||||||||||||||    
T  35329035 gttttgtgatgcatactcatttacctatggaggatgaatatgcatgaaacatgagtga 35329092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 21955 - 22077
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||| |||||||||||||||||||||| || |||  |||||||||||||||||| ||| || | ||||  |  | ||||| | ||||||| ||||||    
T  21955 tacttaggtttgtgatgcatactcatctatctatgaaggatgaatatgcatgaaacaagagagatagttatggggctaggtttgatgaagacattaaatc 22054  T
Q  132 tttcccaccgctaacacaattta 154  Q
    ||| ||| ||||||||| |||||    
T  22055 ttttccagcgctaacacgattta 22077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 29066 - 28963
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    |||||||||||||||||||||||||||||  || | |  |||||||   ||||||||||||||| ||||||  | |||| ||| | ||||||  ||||||    
T  29066 tacttagttttgtgatgcatactcatctacctatggaggatgaataaaaatgaaacatgagtgacatttatgggggtggatttgatgaagactttaaatc 28967  T
Q  132 tttc 135  Q
    ||||    
T  28966 tttc 28963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 22932295 - 22932409
Alignment:
Q  40 tttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatctttcccac 139  Q
    |||||||||||||||||||||| ||   |  |||||||||||||||||||||| || | ||||  | |||||||| | ||||||| ||||| |||||||     
T  22932295 tttgtgatgcatactcatctatctattgaggatgaatatgcatgaaacatgagagacagttatgggggtgggtttgatgaagacattaaatatttcccag 22932394  T
Q  140 cgctaacacaattta 154  Q
    ||||||||| |||||    
T  22932395 cgctaacacgattta 22932409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 7964766 - 7964642
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||| |||||||||||||||||| ||| || | |  ||||||||||||||||||||||||  | ||||  | || ||||| | ||||| | ||||||    
T  7964766 tacttagctttgtgatgcatactcatttatctatggaggatgaatatgcatgaaacatgagtggcagttatgagggttggtttgatgaagatattaaatc 7964667  T
Q  132 tttcccaccgctaacacaatttata 156  Q
    ||| ||| |||||||||| ||||||    
T  7964666 ttttccatcgctaacacattttata 7964642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 8223976 - 8224095
Alignment:
Q  35 ttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatcttt 134  Q
    |||||||||||||||||| |||||||| || | |  |||||||| |||||||||||||||  | ||||  | || ||||| | ||||| | |||||||||    
T  8223976 ttagttttgtgatgcataatcatctatctatggaggatgaatatacatgaaacatgagtggcagttatgagggttggtttgatgaagatattaaatcttt 8224075  T
Q  135 cccaccgctaacacaattta 154  Q
     ||| |||||||||| ||||    
T  8224076 tccatcgctaacacatttta 8224095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 44967665 - 44967728
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtga 95  Q
    |||||||||||||||||||||||||| ||  || | |  |||||||||||||||||||||||||    
T  44967665 tacttagttttgtgatgcatactcatttacctatggaggatgaatatgcatgaaacatgagtga 44967728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 16046957 - 16046835
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||| |||||||||||||| ||||||| || | |  |||||||  |||||||||||||| | ||||||    |||||||| | ||||||  ||||||    
T  16046957 tacttagctttgtgatgcatacccatctatctatggaggatgaatacacatgaaacatgagttacatttatgaaggtgggtttgatgaagactttaaatc 16046858  T
Q  132 tttcccaccgctaacacaattta 154  Q
    ||||||| || ||| ||||||||    
T  16046857 tttcccatcgttaaaacaattta 16046835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 9264 - 9331
Alignment:
Q  35 ttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttat 102  Q
    |||||||||||||||||||||||||||||| | |  ||||||||||||||||||| | ||| ||||||    
T  9264 ttagttttgtgatgcatactcatctatatatggaggatgaatatgcatgaaacatcactgacatttat 9331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 6679 - 6738
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatga 91  Q
    |||||||||||||||||||||||||||||| || | |  |||||||||||||||||||||    
T  6679 tacttagttttgtgatgcatactcatctatctatggaggatgaatatgcatgaaacatga 6738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 32091 - 31988
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtgaaatttatccgagtgggtttcacgaagacaataaatc 131  Q
    ||||||| ||||||||||| |||||||||| || | |  |||||||||||||||||||||| || | ||||  | |||||||| | ||||||| ||||||    
T  32091 tacttaggtttgtgatgcacactcatctatctatggaggatgaatatgcatgaaacatgagagatagttatgggggtgggtttgatgaagacattaaatc 31992  T
Q  132 tttc 135  Q
    ||||    
T  31991 tttc 31988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 13799 - 13862
Alignment:
Q  32 tacttagttttgtgatgcatactcatctatataagaaatatgaatatgcatgaaacatgagtga 95  Q
    |||||||||||||||||||||||||| ||  || | |  |||||||||||||||||||||||||    
T  13799 tacttagttttgtgatgcatactcatttacctatggaggatgaatatgcatgaaacatgagtga 13862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University