View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7314_low_2 (Length: 408)

Name: NF7314_low_2
Description: NF7314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7314_low_2
NF7314_low_2
[»] chr4 (14 HSPs)
chr4 (1-211)||(6011365-6011575)
chr4 (318-390)||(6011575-6011647)
chr4 (181-371)||(31699473-31699663)
chr4 (214-372)||(51475157-51475315)
chr4 (217-370)||(37306401-37306554)
chr4 (202-370)||(43480258-43480428)
chr4 (181-370)||(6540220-6540409)
chr4 (202-338)||(30111785-30111920)
chr4 (276-371)||(21776504-21776597)
chr4 (280-334)||(51902640-51902694)
chr4 (297-338)||(16650566-16650607)
chr4 (265-318)||(27362638-27362691)
chr4 (297-338)||(30111796-30111837)
chr4 (297-338)||(43480271-43480312)
[»] chr8 (9 HSPs)
chr8 (180-370)||(30085373-30085563)
chr8 (259-370)||(6580904-6581014)
chr8 (181-334)||(33440535-33440688)
chr8 (214-338)||(45057936-45058060)
chr8 (180-370)||(28700549-28700739)
chr8 (260-366)||(35689481-35689587)
chr8 (268-331)||(33297739-33297803)
chr8 (290-332)||(38695684-38695726)
chr8 (180-237)||(16895237-16895294)
[»] chr1 (16 HSPs)
chr1 (181-372)||(24886034-24886225)
chr1 (180-372)||(29068074-29068266)
chr1 (181-332)||(19078908-19079059)
chr1 (181-332)||(19126796-19126947)
chr1 (268-373)||(43275769-43275874)
chr1 (274-338)||(12876071-12876135)
chr1 (209-287)||(11709656-11709734)
chr1 (305-366)||(13388335-13388396)
chr1 (299-372)||(18157033-18157106)
chr1 (180-332)||(31602057-31602207)
chr1 (180-237)||(52444504-52444561)
chr1 (260-324)||(15275599-15275663)
chr1 (305-376)||(26980380-26980451)
chr1 (305-372)||(28109988-28110055)
chr1 (259-332)||(17642426-17642497)
chr1 (260-318)||(29418530-29418588)
[»] chr3 (12 HSPs)
chr3 (181-372)||(48543136-48543327)
chr3 (180-370)||(54186924-54187114)
chr3 (190-370)||(13639408-13639588)
chr3 (180-367)||(29235643-29235832)
chr3 (209-295)||(46893416-46893502)
chr3 (231-334)||(1717764-1717867)
chr3 (264-315)||(26223190-26223241)
chr3 (269-312)||(31497765-31497808)
chr3 (180-302)||(42780666-42780788)
chr3 (217-318)||(28215774-28215875)
chr3 (264-337)||(54140813-54140886)
chr3 (305-357)||(24748917-24748969)
[»] chr5 (10 HSPs)
chr5 (180-370)||(5990514-5990704)
chr5 (203-372)||(42958457-42958626)
chr5 (259-371)||(17190603-17190715)
chr5 (181-370)||(30892104-30892293)
chr5 (217-334)||(18237167-18237284)
chr5 (266-337)||(10253161-10253232)
chr5 (314-373)||(34818316-34818375)
chr5 (276-334)||(26435363-26435421)
chr5 (217-302)||(32153756-32153841)
chr5 (205-302)||(41020241-41020338)
[»] chr7 (13 HSPs)
chr7 (180-375)||(41873426-41873621)
chr7 (178-302)||(17878674-17878798)
chr7 (259-370)||(36738532-36738643)
chr7 (197-338)||(47821992-47822133)
chr7 (180-318)||(43930008-43930144)
chr7 (266-334)||(29310453-29310521)
chr7 (299-369)||(31959969-31960039)
chr7 (258-332)||(32377291-32377365)
chr7 (259-355)||(48745238-48745334)
chr7 (217-338)||(557404-557525)
chr7 (279-332)||(23972119-23972172)
chr7 (305-366)||(31502582-31502643)
chr7 (305-338)||(49160367-49160400)
[»] chr6 (2 HSPs)
chr6 (181-370)||(32439473-32439662)
chr6 (180-371)||(7447560-7447750)
[»] chr2 (15 HSPs)
chr2 (181-372)||(864093-864282)
chr2 (183-370)||(6951695-6951883)
chr2 (208-370)||(5139965-5140127)
chr2 (181-372)||(7709745-7709933)
chr2 (189-317)||(8503779-8503906)
chr2 (258-294)||(35452313-35452349)
chr2 (304-370)||(27968915-27968981)
chr2 (304-370)||(28091606-28091672)
chr2 (304-370)||(28101838-28101904)
chr2 (217-295)||(37285185-37285263)
chr2 (259-317)||(42635382-42635440)
chr2 (278-338)||(17188094-17188154)
chr2 (304-356)||(19190641-19190693)
chr2 (274-318)||(34419701-34419745)
chr2 (306-338)||(43400162-43400194)
[»] scaffold0922 (1 HSPs)
scaffold0922 (228-302)||(709-783)
[»] scaffold0543 (1 HSPs)
scaffold0543 (305-338)||(9693-9726)
[»] scaffold0492 (1 HSPs)
scaffold0492 (305-338)||(11239-11272)
[»] scaffold0147 (1 HSPs)
scaffold0147 (279-332)||(28331-28384)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 6011365 - 6011575
Alignment:
Q  1 gagaggagacttggagattaatgattgctttagcaagtccaaaatctggaatgttaaaataggcataaacatattgttaaactaagaaatatttatatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6011365 gagaggagacttggagattaatgattgctttagcaagtccaaaatctggaatgttaaaataggcataaacataatgttaaactaagaaatatttatatta 6011464  T
Q  101 cattctaacgcttgtttcacatatctcccatacacaagtataaaaattaattaaggaacttaaaagaagtatatgcattagaggagtgctatgaagactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011465 cattctaacgcttgtttcacatatctcccatacacaagtataaaaattaattaaggaacttaaaagaagtatatgcattagaggagtgctatgaagactc 6011564  T
Q  201 actttctaaca 211  Q
    |||||||||||    
T  6011565 actttctaaca 6011575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 6011575 - 6011647
Alignment:
Q  318 ataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcatatgtattataaatgtaac 390  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011575 ataaagtgagtgttagagagactgctaaaaagggagtgttcttagcatttctcatatgtattataaatgtaac 6011647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 181 - 371
Target Start/End: Complemental strand, 31699663 - 31699473
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    |||| |||||||| | |||| ||||||||||| ||||| |||||| |||||||||||  ||||||| || |||  | ||| ||||||||||| || | ||    
T  31699663 gaggggtgctatggacactctctttctaacactctctccaacactcactctcttattgggtgaaattcatgtgggtatcatacattggaaatggacccca 31699564  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctca 371  Q
    |||||| || ||||| ||||||   ||| ||||||||  | ||||||||||||||||| | ||| |||| |||||||||||||||||||||    
T  31699563 cataaaatggtgagacccacatgtgtttaatccaataggagagtgagtgttagagagagtgctagaaagagagtgttcttagcatttctca 31699473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 214 - 372
Target Start/End: Complemental strand, 51475315 - 51475157
Alignment:
Q  214 ctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacataaatttcatcc 313  Q
    |||||||||||  |||||||||||  ||||||| || |||  |  |||||||||||||| |||| ||||||||||| ||||||||||||   ||||| ||    
T  51475315 ctctctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcaccc 51475216  T
Q  314 aataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcat 372  Q
    ||||| |  |||||||||||||||| | ||| |||| |||||||| |||||||||||||    
T  51475215 aataagagggtgagtgttagagagagtgctagaaagagagtgttcctagcatttctcat 51475157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 217 - 370
Target Start/End: Complemental strand, 37306554 - 37306401
Alignment:
Q  217 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaat 316  Q
    ||||||||| ||| |||||||  ||||||| || |||  |  |||||||||||||| |||||||||||||||| ||||| |||||| | ||||| |||||    
T  37306554 tctaacactcactttcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgagacccacatgagtttcacccaat 37306455  T
Q  317 aataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    |  | ||||||||||||||||| | ||| |||| |||||||| |||||||||||    
T  37306454 ataagagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctc 37306401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 43480258 - 43480428
Alignment:
Q  202 ctttctaacaccctctct--aacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatcca 299  Q
    ||||||||||||||||||  |||||| ||| |||||||   |||||| || |||  |  ||||||||| |||| |||| ||||||||||| ||||| |||    
T  43480258 ctttctaacaccctctctctaacactcactttcttattggctgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagaccca 43480357  T
Q  300 cataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    ||| | ||||| ||||||  | ||||| || ||| |||| | ||| |||| |||||||| |||||||||||    
T  43480358 catgagtttcacccaataggagagtgactgctagggagagtgctagaaagagagtgttcctagcatttctc 43480428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 370
Target Start/End: Original strand, 6540220 - 6540409
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    |||||||| |||| | |||| |||| |||||| || | |||||   |||||||||||  |||||||  | |||  | ||| ||||||||||| ||||  |    
T  6540220 gaggagtgttatggacactctctttttaacactctttgtaacatccactctcttattgggtgaaatcaatgtggttatcatacattggaaatggatccta 6540319  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    || |||||| |||||||||||||| ||||| ||||||  | | ||||||||||||||| |  || |||| |||||||| || ||||||||    
T  6540320 cacaaagtggtgagatccacataagtttcacccaataggagaatgagtgttagagagagtgatagaaagagagtgttcctaccatttctc 6540409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 338
Target Start/End: Original strand, 30111785 - 30111920
Alignment:
Q  202 ctttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccaca 301  Q
    ||||||||||| |||||||||||| ||| |||||||   |||||  || |||  |  |||||||||||| | |||| ||||||||||| |||||||||||    
T  30111785 ctttctaacactctctctaacactcactttcttattggatgaaagtcatgtgggtaccacacattggaatt-gatcccacataaagtggtgagatccaca 30111883  T
Q  302 taaatttcatccaataataaagtgagtgttagagaga 338  Q
    | | ||||| ||||||  | |||||||||| ||||||    
T  30111884 tgagtttcacccaatatgagagtgagtgtttgagaga 30111920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 371
Target Start/End: Complemental strand, 21776597 - 21776504
Alignment:
Q  276 tctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctca 371  Q
    |||||||||||||| |||||  ||||| ||||||| ||||||| | |||| || ||||||| |  ||||||||  ||||||||||| |||||||||    
T  21776597 tctcacataaagtggtgagactcacatgaatttcacccaataaaagagtgggtattagagata--actaaaaatagagtgttcttaacatttctca 21776504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 51902640 - 51902694
Alignment:
Q  280 acataaagtgatgagatccacataaatttcatccaataataaagtgagtgttaga 334  Q
    |||||||||  |||||||||||| ||||||| | ||||| |||||||||||||||    
T  51902640 acataaagtattgagatccacatgaatttcacctaataaaaaagtgagtgttaga 51902694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 16650566 - 16650607
Alignment:
Q  297 ccacataaatttcatccaataataaagtgagtgttagagaga 338  Q
    |||||||||||||||||||||| ||||| |||||||| ||||    
T  16650566 ccacataaatttcatccaataaaaaagttagtgttagggaga 16650607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 27362638 - 27362691
Alignment:
Q  265 ttggaaatagatctcacataaagtgatgagatccacataaatttcatccaataa 318  Q
    |||||||| |||||||| ||||||| |||||||||||| | |||||| ||||||    
T  27362638 ttggaaatggatctcacgtaaagtggtgagatccacatgagtttcattcaataa 27362691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 30111837 - 30111796
Alignment:
Q  297 ccacataaatttcatccaataataaagtgagtgttagagaga 338  Q
    |||||| | ||||||||||||| |||||||||||||||||||    
T  30111837 ccacatgactttcatccaataagaaagtgagtgttagagaga 30111796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 43480312 - 43480271
Alignment:
Q  297 ccacataaatttcatccaataataaagtgagtgttagagaga 338  Q
    |||||| ||||||| ||||||| |||||||||||||||||||    
T  43480312 ccacatgaatttcagccaataagaaagtgagtgttagagaga 43480271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 370
Target Start/End: Complemental strand, 30085563 - 30085373
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    |||||| || |||| | |||| ||||||||||| |||||||||||||||||||||||| |||||||| || |||| |||||||  |||||||| |||| |    
T  30085563 agaggaatgttatggacactctctttctaacactctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatccc 30085464  T
Q  280 acataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    |||||||||| |||||||||||| | ||||| ||||||| |  |||||| ||||||||| | ||| |||   ||||||| |||||||||||    
T  30085463 acataaagtggtgagatccacatgagtttcacccaataagatggtgagtattagagagaatgctagaaaaatagtgttcctagcatttctc 30085373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 370
Target Start/End: Original strand, 6580904 - 6581014
Alignment:
Q  259 cacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttc 358  Q
    |||||||||||||| |||| ||||||||||| ||||| |||||| | ||||| ||||||  |  |||||||||||||||| | ||| |||| ||||||||    
T  6580904 cacacattggaaat-gatcccacataaagtggtgagacccacatgagtttcacccaatagaagggtgagtgttagagagagtgctagaaagagagtgttc 6581002  T
Q  359 ttagcatttctc 370  Q
    ||| ||||||||    
T  6581003 ttaacatttctc 6581014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 334
Target Start/End: Complemental strand, 33440688 - 33440535
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    |||||||| |||| | |||| |||| |||||| |||||||||| | |||||||||||  ||||||  || |||  |  |||||||||||||| |||| ||    
T  33440688 gaggagtgttatggacactctctttataacactctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatccca 33440589  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgttaga 334  Q
    ||||||||| ||||| |||||| | ||||| | ||||  | |||||||||||||    
T  33440588 cataaagtggtgagacccacatgagtttcacctaataggagagtgagtgttaga 33440535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 338
Target Start/End: Complemental strand, 45058060 - 45057936
Alignment:
Q  214 ctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacataaatttcatcc 313  Q
    |||||||||||| |||||||||||   |||||   | |||| | |||||| |||||||| |||| |||||||||||| |||| |||||||| ||||| ||    
T  45058060 ctctctaacactcactctcttattggttgaaacttatgtgagtctcacactttggaaatggatcccacataaagtgacgagacccacataagtttcaccc 45057961  T
Q  314 aataataaagtgagtgttagagaga 338  Q
    ||||  | ||||||| || ||||||    
T  45057960 aataggagagtgagttttggagaga 45057936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 370
Target Start/End: Original strand, 28700549 - 28700739
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    ||||||||| |||| | |||| ||||||||||| |||||||||||| |||||||||||  || ||||  | |||  |  |||| |||||||||  ||| |    
T  28700549 agaggagtgttatgtacactctctttctaacactctctctaacactcactctcttattgggttaaatttatgtgggtaccacatattggaaatgaatccc 28700648  T
Q  280 acataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    |||||||||| |||||  ||||| | |||||  |||||  | ||||||||||| ||||  |  || ||||  ||||||| |||||||||||    
T  28700649 acataaagtggtgagactcacatgagtttcactcaatagaagagtgagtgttaaagagtgtgatagaaagaaagtgttcatagcatttctc 28700739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 366
Target Start/End: Complemental strand, 35689587 - 35689481
Alignment:
Q  260 acacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttct 359  Q
    |||| ||| |||| || ||||||||||||| || ||   ||||  |||||||||||||| |||||||||| |||||||| | || ||||| |||||||||    
T  35689587 acactttgaaaatggaactcacataaagtggtgggacatacattgatttcatccaataaaaaagtgagtgctagagagagtgctcaaaagagagtgttct 35689488  T
Q  360 tagcatt 366  Q
    || ||||    
T  35689487 taccatt 35689481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 33297739 - 33297803
Alignment:
Q  268 gaaatagatctcacataaa-gtgatgagatccacataaatttcatccaataataaagtgagtgtt 331  Q
    ||||||||||||||||||| ||| |||||| |||||||| ||| || ||||| ||||||||||||    
T  33297739 gaaatagatctcacataaaagtggtgagattcacataaaattcttctaataaaaaagtgagtgtt 33297803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 38695726 - 38695684
Alignment:
Q  290 atgagatccacataaatttcatccaataataaagtgagtgtta 332  Q
    ||||||||||||| ||||||||||||||| | |||||||||||    
T  38695726 atgagatccacattaatttcatccaataagagagtgagtgtta 38695684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 16895237 - 16895294
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttatt 237  Q
    |||| ||||||||||| ||||  |||||||||  |||||||||||| |||||||||||    
T  16895237 agagaagtgctatgaacactctttttctaacattctctctaacactcactctcttatt 16895294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 372
Target Start/End: Original strand, 24886034 - 24886225
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    ||||||||||||| | | || ||||||||||| |||||||||||| ||||| |||||  ||||||| || |||  |  ||||||||| ||||||||| ||    
T  24886034 gaggagtgctatggacattctctttctaacactctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgtaaatagatccca 24886133  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcat 372  Q
    ||||||| | ||||| |||||| | ||||| ||||||  | ||||||||||||||||| | ||| |||| ||||||||||||||||||||||    
T  24886134 cataaagcggtgagacccacatgagtttcacccaataggagagtgagtgttagagagagtgctagaaagagagtgttcttagcatttctcat 24886225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 372
Target Start/End: Original strand, 29068074 - 29068266
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    ||||||||| |||| | |||| |||||||||||  ||||||||||| ||| | |||||  |||||||||  |||  |  |||||||||||||| |||| |    
T  29068074 agaggagtgttatggacactctctttctaacactttctctaacactcactattttattgggtgaaatacgtgtgggtaccacacattggaaattgatccc 29068173  T
Q  280 acataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcat 372  Q
    ||||||| || ||||| |||||| | ||||||||||||  | ||||||||||||||||| | ||| |||| |||||||| |||||||||||||    
T  29068174 acataaaatggtgagacccacatgagtttcatccaataggagagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctcat 29068266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 19078908 - 19079059
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    ||||||||||||| | ||||  |||||||||| |||||||||||| |||||||||||  ||||||  || | |  |  |||||||||||||| |||| ||    
T  19078908 gaggagtgctatggacactctgtttctaacactctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatccca 19079007  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgtta 332  Q
    ||||||||| ||||| |||||| | ||||| ||||||  | |||||||||||    
T  19079008 cataaagtggtgagacccacatgagtttcacccaataggagagtgagtgtta 19079059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 19126796 - 19126947
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    ||||||||||||| | ||||  |||||||||| |||||||||||| |||||||||||  ||||||  || | |  |  |||||||||||||| |||| ||    
T  19126796 gaggagtgctatggacactctgtttctaacactctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatccca 19126895  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgtta 332  Q
    ||||||||| ||||| |||||| | ||||| ||||||  | |||||||||||    
T  19126896 cataaagtggtgagacccacatgagtttcacccaataggagagtgagtgtta 19126947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 373
Target Start/End: Complemental strand, 43275874 - 43275769
Alignment:
Q  268 gaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcattt 367  Q
    ||||| |||| |||||||| |  ||||| |||||| |||||||  |||||| |||||||||||| |||||| | ||| |||| ||||| || ||||||||    
T  43275874 gaaatggatcccacataaaatcgtgagacccacatgaatttcactcaataaaaaagtgagtgttggagagagtgctagaaagtgagtgctcctagcattt 43275775  T
Q  368 ctcata 373  Q
    ||||||    
T  43275774 ctcata 43275769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 12876071 - 12876135
Alignment:
Q  274 gatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagaga 338  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||| | || |||||||| |||||    
T  12876071 gatcccacataaagtggtgagatccacataaatttcatcaaataaaatagcgagtgttaaagaga 12876135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 11709734 - 11709656
Alignment:
Q  209 acaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaag 287  Q
    |||| |||||||||||| ||||||||||| |||||||| || |||  |  |||||||||||||| |||| |||||||||    
T  11709734 acactctctctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 13388396 - 13388335
Alignment:
Q  305 atttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatt 366  Q
    |||||||||||||| ||||||||||||||||||| || | ||||| |||||||  |||||||    
T  13388396 atttcatccaataaaaaagtgagtgttagagagagtattcaaaagagagtgttgctagcatt 13388335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 18157106 - 18157033
Alignment:
Q  299 acataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcat 372  Q
    |||| ||||||||||||||| |||||| |||||||||||| |  | ||||| |||||| | |||||||||||||    
T  18157106 acattaatttcatccaataaaaaagtgggtgttagagagagtgttgaaaagagagtgtccctagcatttctcat 18157033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 31602057 - 31602207
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    |||||||||||||| | ||||  |||  ||||| |||||||||||| | |||||||||   |||||  || |||  | |||||| |||||||| |||| |    
T  31602057 agaggagtgctatggacactc--ttttcaacactctctctaacactcattctcttattggatgaaactcatgtgggtctcacactttggaaatggatccc 31602154  T
Q  280 acataaagtgatgagatccacataaatttcatccaataataaagtgagtgtta 332  Q
    || ||||||| ||||| ||||||   ||||||||||||| | |||||||||||    
T  31602155 acctaaagtggtgagacccacatgtgtttcatccaataagagagtgagtgtta 31602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 52444561 - 52444504
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttatt 237  Q
    |||||||||||||| | |||| |||||||||||||||||||||| |  ||||||||||    
T  52444561 agaggagtgctatggacactctctttctaacaccctctctaacattccctctcttatt 52444504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 15275599 - 15275663
Alignment:
Q  260 acacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagt 324  Q
    |||||||| |||||||||||| |||||||||||||||| |||  | ||||||| ||||| |||||    
T  15275599 acacattgtaaatagatctcatataaagtgatgagatcgacacgactttcatcaaataaaaaagt 15275663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 26980380 - 26980451
Alignment:
Q  305 atttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcatatgt 376  Q
    |||||||||||||||| ||||||| ||||||||| |  | ||||| ||||||| |||||||| ||| |||||    
T  26980380 atttcatccaataatagagtgagtattagagagagtgttgaaaagtgagtgttgttagcattcctcgtatgt 26980451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 372
Target Start/End: Original strand, 28109988 - 28110055
Alignment:
Q  305 atttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcat 372  Q
    |||||||||||||| ||||||||| ||||||| | |||| ||||| |||||||| || |||| |||||    
T  28109988 atttcatccaataaaaaagtgagtattagagaaagtacttaaaagagagtgttcctaacattcctcat 28110055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 17642426 - 17642497
Alignment:
Q  259 cacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgtta 332  Q
    |||||||| ||||| ||||  ||||||||||||||||  || |||| |||||||||||| || |||||||||||    
T  17642426 cacacattagaaatggatcatacataaagtgatgaga--catataagtttcatccaatagtagagtgagtgtta 17642497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 29418588 - 29418530
Alignment:
Q  260 acacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaataa 318  Q
    |||| ||||||||||| ||||||||||||| ||||||  |||| ||||| |||||||||    
T  29418588 acactttggaaatagaactcacataaagtggtgagatatacattaattttatccaataa 29418530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 181 - 372
Target Start/End: Complemental strand, 48543327 - 48543136
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    ||||||||||||||| |||| ||||||||||| ||||| |||||| |||||||||||  ||||||| || |||  |  || ||||||||||| || | ||    
T  48543327 gaggagtgctatgaacactctctttctaacactctctccaacactcactctcttattgggtgaaattcatgtgggtagcatacattggaaatggacccca 48543228  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcat 372  Q
    |||||| || ||||| ||||||   ||| ||||||||  | |||||||||||||| || | ||| |||| ||||||||||||||||||||||    
T  48543227 cataaaatggtgagacccacatgtgtttaatccaataggagagtgagtgttagagtgagtgctagaaagagagtgttcttagcatttctcat 48543136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 180 - 370
Target Start/End: Complemental strand, 54187114 - 54186924
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    |||| ||||||||| | |||| ||||||||||| |||||||||||| |||||||||||  ||||| | || |||  |  |||||||| ||||| |||| |    
T  54187114 agagaagtgctatggacactctctttctaacactctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatccc 54187015  T
Q  280 acataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    ||||||| || |||||| ||||| | ||||| ||||||  | ||||| ||||||||||| |  || |||| ||||||||||||||||||||    
T  54187014 acataaaatggtgagattcacatgagtttcacccaataggagagtgaatgttagagagagtgttagaaagagagtgttcttagcatttctc 54186924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 370
Target Start/End: Original strand, 13639408 - 13639588
Alignment:
Q  190 tatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtg 289  Q
    |||||| |||| ||||||||||| |||||||||| | ||||| |||||   |||||| || |||  | ||||||||||||||| ||||||||||||||||    
T  13639408 tatgaacactctctttctaacactctctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtg 13639507  T
Q  290 atgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
     ||||| |||||| | ||||| ||||||  | |||| | |||||||||| | ||| |||| | |||||||| |||||||||    
T  13639508 gtgagacccacatgagtttcacccaatagaatagtgggcgttagagagagtgctagaaagagggtgttcttggcatttctc 13639588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 367
Target Start/End: Original strand, 29235643 - 29235832
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    ||||||||| |||| | |||| ||||||||||| |||||||||||| |||||||||||  ||||||| || | | ||  |||||||| ||||| ||||      
T  29235643 agaggagtgttatggacactctctttctaacactctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatcca 29235742  T
Q  280 acataaagtgatgagatccacataaatttcatccaataataaagtga--gtgttagagagactactaaaaagggagtgttcttagcattt 367  Q
    |||||||||| |||||  || || | ||||| ||||||  |||||||  |||||||||||  | ||| |||| |||||||| || |||||    
T  29235743 acataaagtggtgagactcatatgagtttcacccaataggaaagtgaatgtgttagagagggtgctagaaagagagtgttcctaacattt 29235832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 46893502 - 46893416
Alignment:
Q  209 acaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgaga 295  Q
    |||| |||||||||||| ||||||||||||| |||||| || |||  |  |||||||||||||| |||| ||||||||||| |||||    
T  46893502 acactctctctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggtgaga 46893416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 1717764 - 1717867
Alignment:
Q  231 tcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgt 330  Q
    ||||||| |||||||| || ||| || ||| | ||||||||| ||||  |||||||||| ||||||||| ||| |||||||| ||||  | |||||||||    
T  1717764 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcatacataaagtggtgagatccatatagatttcatctaatacgagagtgagtgt 1717863  T
Q  331 taga 334  Q
    ||||    
T  1717864 taga 1717867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 26223241 - 26223190
Alignment:
Q  264 attggaaatagatctcacataaagtgatgagatccacataaatttcatccaa 315  Q
    |||| |||| |||| |||||||||||||||||||||||| ||||||||||||    
T  26223241 attgaaaatggatcccacataaagtgatgagatccacatgaatttcatccaa 26223190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 31497765 - 31497808
Alignment:
Q  269 aaatagatctcacataaagtgatgagatccacataaatttcatc 312  Q
    ||||||||||||||||||||| |||||||||||||  |||||||    
T  31497765 aaatagatctcacataaagtggtgagatccacataggtttcatc 31497808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 42780666 - 42780788
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    |||||||||||||| | |||  ||||||||||| |||||||||||| | |||||||||   |||||| || ||   | |||||| | | |||| |||| |    
T  42780666 agaggagtgctatggacactatctttctaacactctctctaacactcattctcttattggatgaaatccatgtaggtctcacacttagaaaatggatccc 42780765  T
Q  280 acataaagtgatgagatccacat 302  Q
    |||||||||| ||||| ||||||    
T  42780766 acataaagtggtgagacccacat 42780788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 28215875 - 28215774
Alignment:
Q  217 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaat 316  Q
    ||||||||  |||||||||||  ||||||  ||||||  | |||||| |||||||| || | | ||||||||||||||| |||||| | ||||| |||||    
T  28215875 tctaacacccactctcttattgggtgaaactcacgtgggtctcacactttggaaatggaccccgcataaagtgatgagacccacatgagtttcacccaat 28215776  T
Q  317 aa 318  Q
    ||    
T  28215775 aa 28215774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 54140813 - 54140886
Alignment:
Q  264 attggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagag 337  Q
    ||||||||| |||| ||||||||||| |||||  | ||| ||||||| | ||||| | ||||||||||||||||    
T  54140813 attggaaatggatcccacataaagtggtgagactcgcatgaatttcacctaataagagagtgagtgttagagag 54140886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 24748969 - 24748917
Alignment:
Q  305 atttcatccaataataaagtgagtgttagagagactactaaaaagggagtgtt 357  Q
    |||||||||||||| | ||||||||||||||||| | || ||||| |||||||    
T  24748969 atttcatccaataaaagagtgagtgttagagagagtgctcaaaagagagtgtt 24748917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 370
Target Start/End: Complemental strand, 5990704 - 5990514
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    |||||||||||||| | |||| |||||||||||  |||| |||||| ||||| |||||  ||||||| || |||  |  || ||||||||||| |||| |    
T  5990704 agaggagtgctatggacactctctttctaacactttctccaacactcactcttttattgggtgaaattcatgtgggtaccatacattggaaatggatccc 5990605  T
Q  280 acataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    ||||||| || ||||| ||||||  |||| ||||||||  | ||||||||||||||||| | |||||||| ||| ||||||||||||||||    
T  5990604 acataaaatggtgagacccacatgtatttaatccaatatgagagtgagtgttagagagagtgctaaaaagagagcgttcttagcatttctc 5990514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 203 - 372
Target Start/End: Original strand, 42958457 - 42958626
Alignment:
Q  203 tttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 302  Q
    |||||||||| |||||||||| | ||| | |||||  ||||||| || |||  |  ||| |||||||||| |||| ||||||||||| ||||| || |||    
T  42958457 tttctaacactctctctaacagtcacttttttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgagacccgcat 42958556  T
Q  303 aaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcat 372  Q
     | ||||||||||||  |||||||||||||||| || | ||| |||| |||||||| |||||||||||||    
T  42958557 gagtttcatccaatagaaaagtgagtgttagagtgagtgctagaaagagagtgttcctagcatttctcat 42958626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 259 - 371
Target Start/End: Complemental strand, 17190715 - 17190603
Alignment:
Q  259 cacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttc 358  Q
    |||||||| ||||| |||| ||||||||||| ||||| |||||||| ||||| | ||||  ||||||||||||||||||| | ||| |||| ||||||||    
T  17190715 cacacattagaaatggatcccacataaagtggtgagacccacataagtttcacctaataggaaagtgagtgttagagagagtgctagaaagagagtgttc 17190616  T
Q  359 ttagcatttctca 371  Q
     ||||||||||||    
T  17190615 atagcatttctca 17190603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 370
Target Start/End: Original strand, 30892104 - 30892293
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    |||||||| |||| | |||  ||||||||||| || ||||||||| |||||||||||  ||||| | || |||  |  |||||||| ||||| |||| ||    
T  30892104 gaggagtgttatggacactttctttctaacactctttctaacactcactctcttattcggtgaagttcatgtgggtaccacacattagaaatggatccca 30892203  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    |||||| || |||||  || || | ||||| ||||||  | ||||||||||||||||| | ||| |||| |||||||| |||||||||||    
T  30892204 cataaaatggtgagactcatatgagtttcacccaataggagagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctc 30892293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 18237284 - 18237167
Alignment:
Q  217 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaat 316  Q
    ||||||||| ||||| |||||  ||||||| || |||  | |||||||||| ||||||||| ||||||||||| ||||| |||||| ||||||| ||||     
T  18237284 tctaacactcactcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgagacccacatgaatttcacccaag 18237185  T
Q  317 aataaagtgagtgttaga 334  Q
    |  || ||||||||||||    
T  18237184 aggaaggtgagtgttaga 18237167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 10253161 - 10253232
Alignment:
Q  266 tggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagag 337  Q
    |||||||||| ||||||||||||| || ||   |||| ||||||||||||||  | ||||||||||||||||    
T  10253161 tggaaatagaactcacataaagtggtgggacatacattaatttcatccaatagaagagtgagtgttagagag 10253232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 34818316 - 34818375
Alignment:
Q  314 aataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcata 373  Q
    ||||| ||||||||||||||||||| | || ||||| || ||||| ||||||||||||||    
T  34818316 aataaaaaagtgagtgttagagagagtgctcaaaagagaatgttcctagcatttctcata 34818375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 26435363 - 26435421
Alignment:
Q  276 tctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttaga 334  Q
    |||||||||||||| ||||| |||| ||||||||| ||||||  | |||||||||||||    
T  26435363 tctcacataaagtggtgagacccacgtaaatttcacccaataggagagtgagtgttaga 26435421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 32153841 - 32153756
Alignment:
Q  217 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 302  Q
    ||||||||| |||||||||||  ||||||  || ||| ||  ||||| |||||||| |||| ||||||||||| ||||| ||||||    
T  32153841 tctaacactcactctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgagacccacat 32153756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 41020338 - 41020241
Alignment:
Q  205 tctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 302  Q
    |||||||| |||||||||||  |||||||||||  |||||||| | |||  |  |||| |||||||||  ||| ||||||||||| ||||| ||||||    
T  41020338 tctaacacactctctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgagacccacat 41020241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 375
Target Start/End: Complemental strand, 41873621 - 41873426
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    |||||||||||||| | |||| |||||||| || ||||||||  || ||||| |||||  ||||| | || |||  |  |||||||| ||||| || | |    
T  41873621 agaggagtgctatggacactctctttctaatactctctctaattctcactcttttattgggtgaagttcatgtgggtaccacacattagaaatggaaccc 41873522  T
Q  280 acataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcatatg 375  Q
    ||||||||||||||||  ||||| | ||||| ||||||| ||||||||||||||||||| | ||| |||| |||||||| ||||||||||| ||||    
T  41873521 acataaagtgatgagactcacatgagtttcacccaataaaaaagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctcttatg 41873426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 302
Target Start/End: Original strand, 17878674 - 17878798
Alignment:
Q  178 ttagaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatc 277  Q
    ||||| |||||||||| | |||| ||||||||||| |||| ||||| |||||||||||||  ||||||  || |||  | ||||||||| ||||||||||    
T  17878674 ttagaagagtgctatggacactctctttctaacactctctttaacatttactctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatc 17878773  T
Q  278 tcacataaagtgatgagatccacat 302  Q
     ||||||||||| ||||||| ||||    
T  17878774 ccacataaagtggtgagatcgacat 17878798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 259 - 370
Target Start/End: Original strand, 36738532 - 36738643
Alignment:
Q  259 cacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttc 358  Q
    ||||| |||||||| |||| ||||||||||| ||||| |||||| | ||||| ||||||  | ||||||||||||| ||| | |||||||| ||||||||    
T  36738532 cacacgttggaaatggatcccacataaagtggtgagacccacatgagtttcacccaataggagagtgagtgttagaaagagtgctaaaaagagagtgttc 36738631  T
Q  359 ttagcatttctc 370  Q
    ||| ||||||||    
T  36738632 ttaacatttctc 36738643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 338
Target Start/End: Original strand, 47821992 - 47822133
Alignment:
Q  197 actcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagat 296  Q
    |||| ||||||| ||| |||||||||||| |||||  ||||  ||||||| || |||  |  |||||||||||||| |||| ||||||||||| ||||||    
T  47821992 actctctttctagcactctctctaacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 47822091  T
Q  297 ccacataaatttcatccaataataaagtgagtgttagagaga 338  Q
    ||||||   ||||| ||||||  | |||||||||||||||||    
T  47822092 ccacatgggtttcacccaatagaagagtgagtgttagagaga 47822133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 318
Target Start/End: Complemental strand, 43930144 - 43930008
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    ||||||||| |||| | |||| ||||||||||| |||||||||||| ||||| |||||  ||||||| || |||  |  ||||||||| |||| |||| |    
T  43930144 agaggagtgttatggacactctctttctaacactctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcac 43930045  T
Q  280 acataaagtgatgagatccacataaatttcatccaataa 318  Q
    | |||||||| ||||| |||||| ||||| |||||||||    
T  43930044 a-ataaagtggtgaga-ccacattaattttatccaataa 43930008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 29310521 - 29310453
Alignment:
Q  266 tggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttaga 334  Q
    ||||||| |||| ||||||||||| ||||| |||||| | ||||| ||||||| |||||||||||||||    
T  29310521 tggaaatggatcccacataaagtggtgagacccacatgagtttcacccaataaaaaagtgagtgttaga 29310453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 31959969 - 31960039
Alignment:
Q  299 acataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttct 369  Q
    |||| |||||||||||||||  ||||||||| |||||||| | || ||||| ||||||| |||||||||||    
T  31959969 acattaatttcatccaataaataagtgagtgctagagagagtgctcaaaagagagtgttgttagcatttct 31960039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 32377365 - 32377291
Alignment:
Q  258 tcacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgtta 332  Q
    |||||||||| |||| |||| ||||||||||| | ||| | |||||||||| ||||||||| ||||||| |||||    
T  32377365 tcacacattgaaaatcgatcccacataaagtggtaagacctacataaattttatccaataaaaaagtgaatgtta 32377291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 355
Target Start/End: Complemental strand, 48745334 - 48745238
Alignment:
Q  259 cacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtg 355  Q
    ||||||||| |||| |||| |||||||| |||||||| ||||||  |||| | ||||||| | ||||| ||||||||||| |  ||||||| |||||    
T  48745334 cacacattgcaaatggatcccacataaattgatgagacccacatggatttgacccaataagagagtgaatgttagagagaatgttaaaaagagagtg 48745238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 338
Target Start/End: Complemental strand, 557525 - 557404
Alignment:
Q  217 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaat 316  Q
    ||||||||| |||||||||||   |||||| || |||  | |||||||||  |||| |||| ||||||||||| ||||| |||||| | ||||| |||||    
T  557525 tctaacactcactctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgagacccacatgagtttcacccaat 557426  T
Q  317 a-ataaagtgagtgttagagaga 338  Q
    | || || |||||||||||||||    
T  557425 agattaa-tgagtgttagagaga 557404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 23972119 - 23972172
Alignment:
Q  279 cacataaagtgatgagatccacataaatttcatccaataataaagtgagtgtta 332  Q
    |||||||||||||||||| ||||| | ||||||||||||| | ||||| |||||    
T  23972119 cacataaagtgatgagatacacatgagtttcatccaataacatagtgaatgtta 23972172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 31502582 - 31502643
Alignment:
Q  305 atttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatt 366  Q
    |||||||||||||| | |||||||||||||||||||  | ||||| |||||||  |||||||    
T  31502582 atttcatccaataaaagagtgagtgttagagagactgttgaaaagtgagtgttgctagcatt 31502643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 49160367 - 49160400
Alignment:
Q  305 atttcatccaataataaagtgagtgttagagaga 338  Q
    |||||||||||||||||||| |||||||||||||    
T  49160367 atttcatccaataataaagtaagtgttagagaga 49160400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 370
Target Start/End: Original strand, 32439473 - 32439662
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    ||||||||||||||| |||| ||||| ||||| |||||||||||| |||||||||||  ||||||| || |||  |  |||||||||||||| |||| ||    
T  32439473 gaggagtgctatgaacactctctttcaaacactctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatccca 32439572  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    ||||||| | ||||  |||| |   ||||||||||||  ||| | ||||||||||||| | ||| |||| |||||||| ||| |||||||    
T  32439573 cataaagcggtgagccccacttgggtttcatccaatagaaaaataagtgttagagagagtgctagaaagagagtgttcctagtatttctc 32439662  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 371
Target Start/End: Complemental strand, 7447750 - 7447560
Alignment:
Q  180 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 279  Q
    |||||||||||||  | ||||  |||||||||| |||||||||| | |||||||| ||  ||||||| || |||  |  |||||||| ||||| |||| |    
T  7447750 agaggagtgctattgacactctatttctaacactctctctaaca-tcactctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatccc 7447652  T
Q  280 acataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctca 371  Q
    |||||||||| ||||| |||||| |  |||| ||||||  |  |||| ||||| ||||| | ||| |||| |||||||| || |||||||||    
T  7447651 acataaagtggtgagacccacatgagcttcacccaataggagggtgattgttatagagaatgctagaaagagagtgttcctaacatttctca 7447560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 372
Target Start/End: Complemental strand, 864282 - 864093
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    ||||||||||||||| |||| ||||| |||||  ||||||||||| |||||||||||  ||||||| || |||  |  |||||||| ||||| |||| ||    
T  864282 gaggagtgctatgaacactctctttcaaacac--tctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatccca 864185  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcat 372  Q
    ||||||| ||||||  |||| |   ||||||||||||  ||| | ||||||||||||| | ||| |||| |||||||| ||| |||||||||    
T  864184 cataaagcgatgagccccacttgggtttcatccaatagaaaaataagtgttagagagagtgctagaaagagagtgttcctagtatttctcat 864093  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 183 - 370
Target Start/End: Original strand, 6951695 - 6951883
Alignment:
Q  183 ggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaa-tacacgtgaatgtcacacattggaaatagatctcac 281  Q
    |||||| |||| | |||| ||||||||||| || | | ||||| ||||||||||| ||||||| | || |||  || ||||||||| |||| |||| |||    
T  6951695 ggagtgttatgtacactctctttctaacactctttgtgacactaactctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccac 6951794  T
Q  282 ataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    |||||||| ||||| |||||| | ||||||||||||  || |||||||||| ||||| |  || ||||  |||||| ||||||||||||    
T  6951795 ataaagtggtgagacccacatgagtttcatccaataggaaggtgagtgttaaagagagtgttagaaagatagtgtttttagcatttctc 6951883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 370
Target Start/End: Complemental strand, 5140127 - 5139965
Alignment:
Q  208 aacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacataaatt 307  Q
    ||||| |||| | ||||| ||||||||||| |||||||| || |||  |  ||||||||| |||| |||| ||||||||||| ||| | || ||| | ||    
T  5140127 aacactctctatgacactcactctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaaacccgcatgagtt 5140028  T
Q  308 tcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    ||| ||||||  | ||||||||||||||||| | ||| |||| |||||||| |||||||||||    
T  5140027 tcacccaataggagagtgagtgttagagagagtgctagaaagagagtgttcctagcatttctc 5139965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 372
Target Start/End: Original strand, 7709745 - 7709933
Alignment:
Q  181 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 280  Q
    ||||||||||||| | |||| |||||||||||  ||||||||||| ||||| |||||  ||||| |  | |||  |  ||||||||||||||||||| ||    
T  7709745 gaggagtgctatggacactctctttctaacac--tctctaacactcactcttttattgggtgaattt-atgtgggtaccacacattggaaatagatccca 7709841  T
Q  281 cataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctcat 372  Q
    ||||||||| ||||  |||||| | ||||| || |||  | ||||||||||||||||| | |||||||| || ||||  || ||||||||||    
T  7709842 cataaagtggtgagtcccacatgagtttcaccctataggagagtgagtgttagagagattgctaaaaagagaatgtttctaacatttctcat 7709933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 8503779 - 8503906
Alignment:
Q  189 ctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagt 288  Q
    ||||||| |||| ||||||||| | |||| ||||||| ||||| |||||  |||||||  | ||| ||  | ||||||  ||||  ||||||||||||||    
T  8503779 ctatgaacactctctttctaaccctctctataacactcactct-ttattgggtgaaatctatgtggataccgcacattaaaaatgaatctcacataaagt 8503877  T
Q  289 gatgagatccacataaatttcatccaata 317  Q
    | |||||||||||| | ||||||||||||    
T  8503878 ggtgagatccacatgagtttcatccaata 8503906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 35452349 - 35452313
Alignment:
Q  258 tcacacattggaaatagatctcacataaagtgatgag 294  Q
    |||||||||||||||||||| ||||||||||||||||    
T  35452349 tcacacattggaaatagatcccacataaagtgatgag 35452313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 27968981 - 27968915
Alignment:
Q  304 aatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    ||||||| ||||||| | |||||||| |||||||| |||| ||||| |||||||  |||||||||||    
T  27968981 aatttcacccaataaaagagtgagtgctagagagagtactcaaaagagagtgttgctagcatttctc 27968915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 28091606 - 28091672
Alignment:
Q  304 aatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    ||||||| ||||||| | |||||||| |||||||| |||| ||||| |||||||  |||||||||||    
T  28091606 aatttcacccaataaaagagtgagtgctagagagagtactcaaaagagagtgttgctagcatttctc 28091672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 28101838 - 28101904
Alignment:
Q  304 aatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgttcttagcatttctc 370  Q
    ||||||| ||||||| | |||||||| |||||||| |||| ||||| |||||||  |||||||||||    
T  28101838 aatttcacccaataaaagagtgagtgctagagagagtactcaaaagagagtgttgctagcatttctc 28101904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 37285263 - 37285185
Alignment:
Q  217 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgaga 295  Q
    ||||||||| ||||| |||||  ||||||| || |||  |  |||||||||||||| |||||||| |||||||||||||    
T  37285263 tctaacactcactcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgaga 37285185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 42635382 - 42635440
Alignment:
Q  259 cacacattggaaatagatctcacataaagtgatgagatccacataaatttcatccaata 317  Q
    ||||||||| |||| |||  ||||||||||||||||| |||||| | ||||||||||||    
T  42635382 cacacattgaaaatggattccacataaagtgatgagacccacatgagtttcatccaata 42635440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 17188154 - 17188094
Alignment:
Q  278 tcacataaagtgatgagatccacataaatttcatccaataataaagtgagtgttagagaga 338  Q
    ||||| |||||| |||||| |||||  |||||||||||||| | |||||||| ||||||||    
T  17188154 tcacacaaagtggtgagatacacattgatttcatccaataaaatagtgagtgatagagaga 17188094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 19190693 - 19190641
Alignment:
Q  304 aatttcatccaataataaagtgagtgttagagagactactaaaaagggagtgt 356  Q
    ||||||||||||||| ||| ||||||||||||||| | || ||||| ||||||    
T  19190693 aatttcatccaataagaaaatgagtgttagagagagtgcttaaaagagagtgt 19190641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 34419701 - 34419745
Alignment:
Q  274 gatctcacataaagtgatgagatccacataaatttcatccaataa 318  Q
    ||||||||||||| | || |||||||||||||||||||| |||||    
T  34419701 gatctcacataaaataataagatccacataaatttcatctaataa 34419745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 43400194 - 43400162
Alignment:
Q  306 tttcatccaataataaagtgagtgttagagaga 338  Q
    ||||||||||||| |||||||||||||||||||    
T  43400194 tttcatccaataagaaagtgagtgttagagaga 43400162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 709 - 783
Alignment:
Q  228 ctctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 302  Q
    |||||||||| |||||||| || ||| ||  ||||||||| |||| |||| ||||||||||| ||||| ||||||    
T  709 ctctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgagacccacat 783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Complemental strand, 9726 - 9693
Alignment:
Q  305 atttcatccaataataaagtgagtgttagagaga 338  Q
    |||||||||||||| |||||||||||||||||||    
T  9726 atttcatccaataaaaaagtgagtgttagagaga 9693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Complemental strand, 11272 - 11239
Alignment:
Q  305 atttcatccaataataaagtgagtgttagagaga 338  Q
    |||||||||||||| |||||||||||||||||||    
T  11272 atttcatccaataaaaaagtgagtgttagagaga 11239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 28384 - 28331
Alignment:
Q  279 cacataaagtgatgagatccacataaatttcatccaataataaagtgagtgtta 332  Q
    |||||||| ||||| || ||||||  |||||||||||||| |||||||||||||    
T  28384 cacataaattgatgggacccacattgatttcatccaataagaaagtgagtgtta 28331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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