View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7314_low_5 (Length: 290)
Name: NF7314_low_5
Description: NF7314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7314_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 34758017 - 34758291
Alignment:
| Q |
13 |
cgcacacacggccaaaaccaacgcaaaagtttcctcatcaggtactattccttgttgcctcatctgcttaaaaaccaacaaaccatcaatccctaaacca |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34758017 |
cgcacacacagccaaaaccaacgcaaaagtttcctcatcaggtactattccttgttgcctcatctgcttaaaaaccaacaaaccatcaatccctaaacca |
34758116 |
T |
|
| Q |
113 |
ttcacattatatccaccaatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34758117 |
ttcacattatatccaccaatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttca |
34758216 |
T |
|
| Q |
213 |
cgtacaacccaatcaatctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaaccc |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34758217 |
cgtacaacccaatcaatctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaaccc |
34758291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 34742906 - 34743180
Alignment:
| Q |
13 |
cgcacacacggccaaaaccaacgcaaaagtttcctcatcaggtactattccttgttgcctcatctgcttaaaaaccaacaaaccatcaatccctaaacca |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34742906 |
cgcacacacagccaaaaccaacgcaaaagtttcctcatcaggcactaccccttgttgcctcatctgcttaaaaaccaacaaaccatcaatccctaaacca |
34743005 |
T |
|
| Q |
113 |
ttcacattatatccaccaatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34743006 |
ttcacattatatccaccaatcatcaaattcaacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttca |
34743105 |
T |
|
| Q |
213 |
cgtacaacccaatcaatctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaaccc |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34743106 |
cgtacaacccaatcaatctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaaccc |
34743180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 34615470 - 34615743
Alignment:
| Q |
14 |
gcacacacggccaaaaccaacgcaaaagtttcctcatcaggtactattccttgttgcctcatctgcttaaaaaccaacaaaccatcaatccctaaaccat |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34615470 |
gcacacacagccaaaaccaacgcaaaagtttcctcatcaggcactaccccttgttgcctcatctgcttaaaaaccaacaaaccatcaatccctaaaccat |
34615569 |
T |
|
| Q |
114 |
tcacattatatccaccaatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttcac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34615570 |
tcacattatatccaccaatcatcaaattcaacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttcac |
34615669 |
T |
|
| Q |
214 |
gtacaacccaatcaatctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaaccc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34615670 |
gtacaacccaatcaatctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaaccc |
34615743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 11544301 - 11544575
Alignment:
| Q |
13 |
cgcacacacggccaaaaccaacgcaaaagtttcctcatcaggtactattccttgttgcctcatctgcttaaaaaccaacaaaccatcaatccctaaacca |
112 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544301 |
cgcacacacagtcaaaaccaacgcaaaagtttcctcatcaggcactaccccttgttgactcatctgcttaaaaaccaacaaaccatcaatccctaaacca |
11544400 |
T |
|
| Q |
113 |
ttcacattatatccaccaatcatcaaattccacgaaccgacatttctgtcaggcattttatcaaacactttccgcgcatccttcacactaccacatttca |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544401 |
ttcacattatatccacaaatcatcaaattcaacgaaccgacatttctatcaggcattttatcaaacactttccgcgcatccttcacactaccacatttca |
11544500 |
T |
|
| Q |
213 |
cgtacaacccaatcaatctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaaccc |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11544501 |
cgtacaacccaatcaatctattacacaattcaacattccctccgaatttcgaccttctcaagaattcatgaaccc |
11544575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University