View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_high_1 (Length: 847)
Name: NF7315_high_1
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 25493154 - 25493560
Alignment:
| Q |
1 |
gcatgcttttcagtttttgctagggtaatttatttgtaaatgtgtgagaggggtgagaaaaggtttaactttttctgtttcgcatgtatgctttcaccat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
25493154 |
gcatgcttttcagtttttgctagggtaagttatttgtatatgtgtgagaggggtgagaaaaggtttaccttttg-------gcatgtatgctttcaccat |
25493246 |
T |
|
| Q |
101 |
gaagttacttcatcaacaaagctatactgacgtgatgctcacgcatgactcggnnnnnnngttaggtggccctctctttcccagagcctctcattcattt |
200 |
Q |
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||||||||||||||| |||||||||| |||| |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| || |
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| T |
25493247 |
gaagttacttcatcagcaaagctatattgacttgatgctcacgcatgacttg-tatttttgttaggtggccctctcttttccagagcctctcattcactt |
25493345 |
T |
|
| Q |
201 |
tgctttagtatgtggtactcgatctgggcctgcacttcggtgttattctcctcgagacattgactctgaattaatggctgcaactctcgtaatttcctta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||| |
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| T |
25493346 |
tgctttagtatgtggtactcgatctgggcctgcacttcgatgttattctcctcgagacattgactctgaattaatggatgcaa--ctcgcagtttcctta |
25493443 |
T |
|
| Q |
301 |
gaaatggtggcatttcgatagattttaatgcaaaggctgcatatgccagtaagatcctgaaatggtaagttctatgaaattcaagtatgattgatgtcct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| |||| | |||||||||||| || |
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| T |
25493444 |
gaaatggtggcatttcgatagattttaatgcaaaggttgcacataccagtaagatcctgaaatggtaagttctatgagattctaatatgattgatgttct |
25493543 |
T |
|
| Q |
401 |
ttttggtaaatttaaac |
417 |
Q |
| |
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||| |||| |||||||| |
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| T |
25493544 |
tttaggtagatttaaac |
25493560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 556 - 840
Target Start/End: Original strand, 25494062 - 25494346
Alignment:
| Q |
556 |
atggtgtatttaatgttgggttcaatgaagtggttattgaacttcagttaaggacaaactactcgagagaatttgagtttgatttttggctgagcaaact |
655 |
Q |
| |
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|||||||||||||| |||||||||| ||| ||||||| |||||||||||||| ||||||||||||| |||||||||||| |||||| | |||||||| |
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| T |
25494062 |
atggtgtatttaatattgggttcaa----gtgattattgaccttcagttaaggacgaactactcgagaggatttgagtttgaattttggttaagcaaact |
25494157 |
T |
|
| Q |
656 |
ttatttatctctgatcaaacgccagattac----gtctcttttctttaaaattaaaagattaagacaaaaaatgacaatttttgggaattctaacatttt |
751 |
Q |
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|||||| | || ||||||| | ||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25494158 |
ttatttgtgtccgatcaaatttcggattatcagagtctcttttctctaaaactaaaggattaagacaaaaaatgacaatttttgggaattctaacatttt |
25494257 |
T |
|
| Q |
752 |
ttgttgtgaatattcaggttcagtgtagattttggcaagaatgaggtagaggttatgaagcatgtgtcaatctacttagattcatctca |
840 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25494258 |
ttgttatgaatattcaggttcagtgtagattttggcaagaatgaggtagaagttatgaagcatgtgtcaatctacttagattcatctca |
25494346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 765 - 840
Target Start/End: Complemental strand, 28225970 - 28225895
Alignment:
| Q |
765 |
tcaggttcagtgtagattttggcaagaatgaggtagaggttatgaagcatgtgtcaatctacttagattcatctca |
840 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28225970 |
tcaggttcagtgtagattttggcaagaatgaggtagaggttatgaagcatgtgtcaatctacttagattcatctca |
28225895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 163 - 373
Target Start/End: Original strand, 33184435 - 33184643
Alignment:
| Q |
163 |
taggtggccctctctttcccagagcctctcattcattttgctttagtatgtggtactcgatctgggcctgcacttcggtgttattctcctcgagacattg |
262 |
Q |
| |
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||||| || ||| ||| ||| |||||| | |||||||||||||| |||||||| || |||||||||||||| ||||| || ||||||||| || | |||| |
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| T |
33184435 |
taggttgcactcccttaccccgagcctatgattcattttgctttggtatgtggcacccgatctgggcctgcccttcgatgctattctcctggaaaaattg |
33184534 |
T |
|
| Q |
263 |
actctgaattaatggctgcaactctcgtaatttccttagaaatggtggcatttcgatagattttaatgcaaaggctgcatatgccagtaagatcctgaaa |
362 |
Q |
| |
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|| |||||| ||| ||||| ||||||||||||| |||| ||| || || ||| ||||| | |||||| ||||||||| ||| ||||| || ||| |
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| T |
33184535 |
acgaagaattattggatgcaa--ctcgtaatttcctaagaagtggaggtcttgtgattgatttgacggcaaagactgcatatgtcagcaagattcttaaa |
33184632 |
T |
|
| Q |
363 |
tggtaagttct |
373 |
Q |
| |
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|||| |||||| |
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|
| T |
33184633 |
tggttagttct |
33184643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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