View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_high_12 (Length: 339)
Name: NF7315_high_12
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 25741472 - 25741758
Alignment:
| Q |
1 |
aagtctcattgagacactttttggcttcattgaatgttatgaaataagaatgatgaaggggattgacatagtatagtatcttcatagcttcttgtgtatt |
100 |
Q |
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| T |
25741472 |
aagtctcattgagacactttttggcttcattgaatgttatgaaataagaatgatgaaggggattgacatag-----tatcttcatagcttcttgtgtatt |
25741566 |
T |
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| Q |
101 |
cgcgcgatgtagatgattcgcatcgatccttgtattttctgcggaacttctaacttaagataattagtttccatttctcttccttgaattcctaatagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741567 |
cgcgcgatgtagatgattcgcatcgatccttgtattttctgcggaacttctaacttaagataattagtttccatttctcttccttgaattcctaatagaa |
25741666 |
T |
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| Q |
201 |
tcaaagcaatattaacaggcataggctcaagagagccgtgaaaatacaatgaagtttttgttctgcactgccgtaccacaatctgtcatatt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
25741667 |
tcaaagcaatattaacaggcataggctcaagagagccgtgaaaatacaatgaagtttttgttctgcactgcagtaccacaatctgtcgtatt |
25741758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 25745006 - 25745143
Alignment:
| Q |
1 |
aagtctcattgagacactttttggcttcattgaatgttatgaaa-taagaatgatgaaggggattgacatagtatagtatcttcatagcttcttgtgtat |
99 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| | |
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| T |
25745006 |
aagtcttattgagacactttttggcttcattaaatgttatgaaagtaagaatgatgaagaggattgac-----ctagtatcttcatagcttcttgtgtgt |
25745100 |
T |
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| Q |
100 |
tcgcgcgatgtagatgattcgcatcgatccttgtattttctgc |
142 |
Q |
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|||||| || ||||||||||| | |||||||||||||||||| |
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| T |
25745101 |
tcgcgcaatatagatgattcgtgttgatccttgtattttctgc |
25745143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 25745220 - 25745307
Alignment:
| Q |
144 |
gaacttctaacttaagataattagtttccatttctcttccttgaattcctaatagaatcaaagcaatattaacaggcataggctcaag |
231 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| | | ||| || || |||||||||| |
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| T |
25745220 |
gaacttctaacttaagacaattagtttccatttctcttccttgtattcctaataaaatcaaagaatttttatcaagcgtaggctcaag |
25745307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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