View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7315_high_3 (Length: 618)

Name: NF7315_high_3
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7315_high_3
NF7315_high_3
[»] chr3 (4 HSPs)
chr3 (1-303)||(48236418-48236720)
chr3 (312-600)||(48236102-48236390)
chr3 (356-414)||(25252041-25252099)
chr3 (355-415)||(43381176-43381236)
[»] chr6 (1 HSPs)
chr6 (339-415)||(2732920-2732996)
[»] chr1 (5 HSPs)
chr1 (111-167)||(3685864-3685920)
chr1 (355-416)||(6025970-6026031)
chr1 (383-416)||(33651683-33651716)
chr1 (355-416)||(44417797-44417858)
chr1 (383-415)||(15592684-15592716)
[»] chr7 (1 HSPs)
chr7 (351-415)||(1110409-1110473)
[»] scaffold0491 (1 HSPs)
scaffold0491 (352-396)||(4388-4432)
[»] chr8 (3 HSPs)
chr8 (352-396)||(18737689-18737733)
chr8 (354-416)||(42843363-42843425)
chr8 (352-396)||(18747547-18747591)
[»] chr5 (1 HSPs)
chr5 (332-412)||(43283418-43283498)
[»] chr4 (1 HSPs)
chr4 (341-416)||(415131-415206)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 48236720 - 48236418
Alignment:
Q  1 aaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattgaagttgctaccgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236720 aaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattgaagttgctaccgaga 48236621  T
Q  101 gattctcaccatcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaaactcttaaatcctga 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236620 gattctcaccatcaaagaaactaggtgaaggtggatacggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaaactcttaaatcctga 48236521  T
Q  201 agctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgtatcaacattttttctttgtaccctaaatattaaccatttaataatgcaaatttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236520 agctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgcatcaacattttttctttgtaccctaaatattaaccatttaataatgcaaatttt 48236421  T
Q  301 ccc 303  Q
    |||    
T  48236420 ccc 48236418  T

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Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 312 - 600
Target Start/End: Complemental strand, 48236390 - 48236102
Alignment:
Q  312 aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48236390 aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcactgttatttcgggatatgctatttagtgtaaaatgttgtcaa 48236291  T
Q  412 atagtagcagcacgctataacattgttatgcagcggagtttgaacaaattgctattgacaacgtttgtttacctttttccacttcttaaactttgactgc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236290 atagtagcagcacgctataacattgttatgcagcggagtttgaacaaattgctattgacaacgtttgtttacctttttccacttcttaaactttgactgc 48236191  T
Q  512 cactcatctttttgttatgacaagaatatgtttacacaattatgacaatatactttttcctccttacgtgcacaggttgaggtactaag 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48236190 cactcatctttttgttatgacaagaatatgtttacacaattatgacaatatactttttcctccttacatgcacaggttgaggtactaag 48236102  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 25252041 - 25252099
Alignment:
Q  356 atttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaata 414  Q
    |||||||||||||||| || ||||| |||| ||||||||||  ||||||||||| ||||    
T  25252041 atttgaacaaatcgctcttgtttcgtgatacgctatttagtacaaaatgttgtctaata 25252099  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 43381176 - 43381236
Alignment:
Q  355 aatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatag 415  Q
    |||||||| |||||||| ||||| || ||||||| ||||| |  |||||||||||||||||    
T  43381176 aatttgaataaatcgctattattccgcgatatgcaatttaatacaaaatgttgtcaaatag 43381236  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 2732920 - 2732996
Alignment:
Q  339 cactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatag 415  Q
    ||||||| | ||| ||||||||||||||||||| || ||| | |||||||||||||||  |||||||||||||||||    
T  2732920 cactatagcgtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatag 2732996  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 3685864 - 3685920
Alignment:
Q  111 atcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatca 167  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  3685864 atcaatgaaaataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatca 3685920  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 6026031 - 6025970
Alignment:
Q  355 aatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 416  Q
    ||||||||||||| | | || || || |||||||||||||||  ||||||||||||||||||    
T  6026031 aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatagt 6025970  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 416
Target Start/End: Original strand, 33651683 - 33651716
Alignment:
Q  383 atatgctatttagtgtaaaatgttgtcaaatagt 416  Q
    |||||||||||||| |||||||||||||||||||    
T  33651683 atatgctatttagtataaaatgttgtcaaatagt 33651716  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 44417797 - 44417858
Alignment:
Q  355 aatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 416  Q
    |||||||||||| || | || ||| |||||||| ||||||||| ||| ||||||||||||||    
T  44417797 aatttgaacaaaccgttattgttttgggatatgttatttagtgcaaagtgttgtcaaatagt 44417858  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 15592716 - 15592684
Alignment:
Q  383 atatgctatttagtgtaaaatgttgtcaaatag 415  Q
    ||||||||||| |||||||||||||||||||||    
T  15592716 atatgctatttggtgtaaaatgttgtcaaatag 15592684  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 1110473 - 1110409
Alignment:
Q  351 gcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatag 415  Q
    ||||||||||||||||| ||| || |||||||||||||||||||||   || |||||||||||||    
T  1110473 gcgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatag 1110409  T

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Target: scaffold0491 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 4388 - 4432
Alignment:
Q  352 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 396  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  4388 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 4432  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 18737689 - 18737733
Alignment:
Q  352 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 396  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  18737689 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 18737733  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 416
Target Start/End: Original strand, 42843363 - 42843425
Alignment:
Q  354 aaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 416  Q
    |||||||||||||| ||| || || ||||||| |||||| ||| |||| ||||||||||||||    
T  42843363 aaatttgaacaaattgctattgttccgggataagctattaagtataaattgttgtcaaatagt 42843425  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 18747547 - 18747591
Alignment:
Q  352 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 396  Q
    |||||||||||||||| ||| |  |||||||||||||||||||||    
T  18747547 cgaaatttgaacaaattgctatagtttcgggatatgctatttagt 18747591  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 43283498 - 43283418
Alignment:
Q  332 gctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaa 412  Q
    ||||| |||||||| ||||||| |||||||||||||||||||| || ||  ||| ||||||| |   ||||||||||||||    
T  43283498 gctatagcactatagcatagcgtaatttgaacaaatcgctgttgttccgcaatacgctatttgggacaaaatgttgtcaaa 43283418  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 416
Target Start/End: Original strand, 415131 - 415206
Alignment:
Q  341 ctataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 416  Q
    ||||| ||||||  ||||||||||| ||||| || ||||| ||| |||||||||||  |||||||||| |||||||    
T  415131 ctatagcatagcagaatttgaacaagtcgctattgtttcgtgatttgctatttagtacaaaatgttgtgaaatagt 415206  T

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