View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_high_6 (Length: 444)
Name: NF7315_high_6
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 214 - 434
Target Start/End: Complemental strand, 42634451 - 42634231
Alignment:
| Q |
214 |
tggcttcatattcctacatcaactatgcagttaaaagctactttgatgaatcacagaaaaaagaggaagagcaattcataattacacttacatagaggtg |
313 |
Q |
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| T |
42634451 |
tggcttcatattcctacatcaactatgcagttaaaagctactttgatgaatcacagaaaaaagaggaagagcaattcataattacacttacatagaggtg |
42634352 |
T |
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| Q |
314 |
gagagtagatgattttgcattcaaatgtgaggtttgcatggtgcgtgctgcattaaatcgtgcctgtgctcgtaaaagtgattgcattcttttgagccac |
413 |
Q |
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| T |
42634351 |
gagagtagatgattttgcattcaaatgtgaggtttgcatggtgcgtgctgcattaaatcgtgcctgtgcccgtaaaagtgattgcattcttttgagccac |
42634252 |
T |
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| Q |
414 |
tctgctgttcgtttcatctca |
434 |
Q |
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| T |
42634251 |
tctgctgttcgtttcctctca |
42634231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 42634629 - 42634488
Alignment:
| Q |
20 |
tatacgaccatttgtaaaaactatatgattagatcaagaacatgatgttggcagtattggcattttgatcaacaaatttaaaagatattcaagcatgaat |
119 |
Q |
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| T |
42634629 |
tatacgaccatttgtaaaaactatatgattagatcaagaacatgatgttggcagtattggcattttgatcaacaaatttaaaagatattcaagcatgaat |
42634530 |
T |
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| Q |
120 |
gtgataatattagttaacaagatgaatcaatcttcacatttg |
161 |
Q |
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| T |
42634529 |
gtgataatattagttaacaagatgaatcaatcttcacatttg |
42634488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 44096972 - 44097051
Alignment:
| Q |
78 |
ggcattttgatcaacaaatttaaaagatattcaagcatgaatgtgataatattagttaacaagatgaatcaatcttcaca |
157 |
Q |
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| T |
44096972 |
ggcattttgatcaacaaatttaaaagatactcaagcatgaatgtgataatactaattaacaagatgaatcaaccttcaca |
44097051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 44095718 - 44095678
Alignment:
| Q |
118 |
atgtgataatattagttaacaagatgaatcaatcttcacat |
158 |
Q |
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| T |
44095718 |
atgtgataatattagataacaagatgaatcaaccttcacat |
44095678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 14096078 - 14096021
Alignment:
| Q |
104 |
atattcaagcatgaatgtgataatattagttaacaagatgaatcaatcttcacatttg |
161 |
Q |
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| T |
14096078 |
atattcaagcatgaatgtgataatattagttaataagttgaatcaacctttacatttg |
14096021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 37898885 - 37898831
Alignment:
| Q |
107 |
ttcaagcatgaatgtgataatattagttaacaagatgaatcaatcttcacatttg |
161 |
Q |
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| T |
37898885 |
ttcaagcatgactgtggtaatattagtcaacaagaagaatcaactttcacatttg |
37898831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 18209896 - 18209950
Alignment:
| Q |
107 |
ttcaagcatgaatgtgataatattagttaacaagatgaatcaatcttcacatttg |
161 |
Q |
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| T |
18209896 |
ttcaagcatgaatgtggtaatattagtcaacaagatgaatcaactttcacatttg |
18209950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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