View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_low_10 (Length: 358)
Name: NF7315_low_10
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_low_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 53695760 - 53695404
Alignment:
| Q |
1 |
gatatataatcccctgtcatagacaaaaattataccatgatgttttttagaaacttctctccacaacaaacactgtaaagtcagaataaactaactgtaa |
100 |
Q |
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| T |
53695760 |
gatatataatcccctgtcatagacaaaaattataccatgatgttttttagaaacttctctccacaacaaacactgtaaagtcagaataaactaactgtaa |
53695661 |
T |
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| Q |
101 |
cggtaatnnnnnnntcaatcatagtagattagttgatcctgacattcacaaaatacttatcattatcattctagaccaggaaattgagtactgnnnnnnn |
200 |
Q |
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| T |
53695660 |
cggtaataaaaaa-tcaatcatagtagattagttgatcctgacattcacaaaatacttatcattatcattctagaccaggaaattgagtactgaaaaaat |
53695562 |
T |
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| Q |
201 |
nnnnnngctctcccaaagtgggttgtgtttagtgataatcattttagccagtgaatgtagtttctccttgaaacaagcatgtattgaagttgaagtgaaa |
300 |
Q |
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| T |
53695561 |
caaaaagctctcccaaagtgggttgtgtttagtgataatcattttagccagtgaatgtagtttctccttgaaacaagcatgtattgaagttgaagtgaaa |
53695462 |
T |
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| Q |
301 |
acaatctttcatttattctacattcatcaatactataaagctaagaggaaacctgtgc |
358 |
Q |
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| T |
53695461 |
acaatctttcatttattcttcattcatcaatattataaagctaagaggaaacctgtgc |
53695404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 53688656 - 53688501
Alignment:
| Q |
1 |
gatatataatcccctgtcatagacaaaaattataccatgatgttttttagaaacttctctccacaacaaacactgtaaagtcagaataaactaactgtaa |
100 |
Q |
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|||||||||||||||||||| ||||||| ||||||| ||| |||||| ||||| ||| ||||| |||||| |||||||| ||||||||| | |||| |
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| T |
53688656 |
gatatataatcccctgtcatgaacaaaaagtataccaagattctttttaaaaact--tcttcacaataaacacgataaagtcaaaataaactagccgtaa |
53688559 |
T |
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| Q |
101 |
cggtaatnnnnnnntcaatcatagtagattagttgatcctgacattcacaaaatacttatc |
161 |
Q |
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| T |
53688558 |
cagtaat--gaaaatcaatcatagcagattagttgatcctgaaattca-taaatacttatc |
53688501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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