View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7315_low_11 (Length: 353)

Name: NF7315_low_11
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7315_low_11
NF7315_low_11
[»] chr7 (27 HSPs)
chr7 (22-121)||(16198713-16198811)
chr7 (31-119)||(5418899-5418987)
chr7 (22-120)||(10198308-10198406)
chr7 (22-121)||(11734246-11734345)
chr7 (22-121)||(29983235-29983334)
chr7 (31-122)||(45269463-45269554)
chr7 (22-124)||(36858130-36858232)
chr7 (32-121)||(16217019-16217108)
chr7 (22-123)||(34259278-34259379)
chr7 (33-121)||(10992731-10992819)
chr7 (22-121)||(36099692-36099791)
chr7 (31-121)||(34191916-34192006)
chr7 (22-123)||(44605936-44606037)
chr7 (31-124)||(46170638-46170731)
chr7 (31-123)||(14801973-14802065)
chr7 (31-123)||(15248965-15249057)
chr7 (31-123)||(30801675-30801767)
chr7 (22-121)||(24096724-24096823)
chr7 (34-121)||(31813488-31813575)
chr7 (31-119)||(33628272-33628360)
chr7 (31-122)||(9822518-9822609)
chr7 (31-122)||(10724443-10724534)
chr7 (71-123)||(43779799-43779851)
chr7 (22-121)||(1582155-1582254)
chr7 (31-82)||(8419980-8420031)
chr7 (31-121)||(20623149-20623239)
chr7 (31-123)||(31958647-31958739)
[»] chr4 (29 HSPs)
chr4 (22-121)||(24776170-24776269)
chr4 (22-121)||(4414415-4414514)
chr4 (22-121)||(44352087-44352186)
chr4 (22-121)||(8132791-8132890)
chr4 (22-121)||(25232675-25232774)
chr4 (22-122)||(54822046-54822146)
chr4 (22-121)||(28359679-28359778)
chr4 (25-123)||(29695439-29695537)
chr4 (22-123)||(1936511-1936612)
chr4 (33-121)||(2859419-2859507)
chr4 (31-123)||(38519285-38519377)
chr4 (22-122)||(11792383-11792483)
chr4 (22-121)||(6354974-6355073)
chr4 (22-121)||(19916435-19916534)
chr4 (31-121)||(43245729-43245819)
chr4 (31-121)||(55675420-55675510)
chr4 (31-123)||(32988252-32988344)
chr4 (22-121)||(23611541-23611640)
chr4 (51-121)||(24394073-24394143)
chr4 (47-120)||(5360585-5360658)
chr4 (33-122)||(26203692-26203781)
chr4 (22-120)||(293554-293652)
chr4 (38-121)||(8261055-8261138)
chr4 (38-121)||(8274472-8274555)
chr4 (43-121)||(12704681-12704759)
chr4 (31-121)||(25510487-25510577)
chr4 (32-122)||(2039081-2039171)
chr4 (51-115)||(2323165-2323229)
chr4 (92-124)||(9321012-9321044)
[»] chr3 (30 HSPs)
chr3 (22-122)||(51537193-51537293)
chr3 (22-121)||(42217165-42217264)
chr3 (22-121)||(29727737-29727836)
chr3 (22-121)||(55258088-55258187)
chr3 (22-121)||(15100604-15100703)
chr3 (22-121)||(35054713-35054812)
chr3 (22-121)||(41462358-41462457)
chr3 (22-121)||(23241866-23241965)
chr3 (22-121)||(30465090-30465189)
chr3 (22-129)||(42907761-42907868)
chr3 (22-121)||(53351171-53351270)
chr3 (31-121)||(11574994-11575084)
chr3 (31-121)||(39850695-39850785)
chr3 (43-120)||(11412517-11412594)
chr3 (22-121)||(37599877-37599976)
chr3 (31-121)||(44201109-44201199)
chr3 (22-121)||(29025259-29025358)
chr3 (31-121)||(33634883-33634973)
chr3 (32-121)||(45096288-45096378)
chr3 (52-121)||(10259228-10259297)
chr3 (49-121)||(11676262-11676333)
chr3 (33-121)||(45104126-45104214)
chr3 (22-121)||(2849269-2849367)
chr3 (86-121)||(11018705-11018740)
chr3 (39-120)||(15569768-15569849)
chr3 (22-83)||(50007298-50007359)
chr3 (71-124)||(52404395-52404448)
chr3 (22-121)||(21603600-21603699)
chr3 (53-121)||(27002522-27002590)
chr3 (71-123)||(53605777-53605829)
[»] chr2 (32 HSPs)
chr2 (22-121)||(27905622-27905721)
chr2 (33-123)||(21800698-21800788)
chr2 (22-122)||(35305300-35305400)
chr2 (22-121)||(16106719-16106818)
chr2 (22-121)||(3988705-3988804)
chr2 (22-121)||(29781416-29781515)
chr2 (33-121)||(17513020-17513108)
chr2 (22-121)||(24128753-24128852)
chr2 (22-121)||(6065515-6065614)
chr2 (22-121)||(10810562-10810661)
chr2 (48-122)||(18540657-18540731)
chr2 (22-123)||(23293190-23293291)
chr2 (31-128)||(37484396-37484493)
chr2 (34-121)||(16457764-16457851)
chr2 (31-122)||(19881938-19882029)
chr2 (31-121)||(32878727-32878817)
chr2 (61-121)||(13814896-13814956)
chr2 (31-123)||(37255998-37256090)
chr2 (22-121)||(12365537-12365636)
chr2 (22-121)||(39678304-39678403)
chr2 (52-123)||(41746863-41746934)
chr2 (31-121)||(30963012-30963102)
chr2 (31-121)||(40404311-40404401)
chr2 (32-121)||(22315205-22315294)
chr2 (22-121)||(7153437-7153535)
chr2 (31-121)||(37254847-37254937)
chr2 (38-121)||(39761879-39761962)
chr2 (67-121)||(5560763-5560817)
chr2 (87-121)||(29523952-29523986)
chr2 (71-121)||(39061974-39062024)
chr2 (22-79)||(43869949-43870006)
chr2 (87-123)||(37315003-37315039)
[»] chr1 (29 HSPs)
chr1 (22-124)||(16914494-16914596)
chr1 (22-123)||(3252224-3252325)
chr1 (31-122)||(16914600-16914691)
chr1 (22-121)||(32364121-32364220)
chr1 (31-121)||(33690159-33690249)
chr1 (22-123)||(42866276-42866377)
chr1 (31-121)||(44410712-44410802)
chr1 (22-121)||(28234799-28234898)
chr1 (22-121)||(37034882-37034981)
chr1 (32-122)||(962509-962599)
chr1 (38-121)||(43064723-43064806)
chr1 (22-121)||(44257770-44257869)
chr1 (33-121)||(18032287-18032375)
chr1 (22-121)||(3355400-3355499)
chr1 (22-121)||(24638702-24638798)
chr1 (49-121)||(1846926-1846998)
chr1 (22-120)||(3794153-3794244)
chr1 (33-121)||(20725983-20726071)
chr1 (22-121)||(49241642-49241741)
chr1 (31-121)||(20117857-20117947)
chr1 (31-121)||(31986098-31986188)
chr1 (32-121)||(3014186-3014274)
chr1 (52-121)||(9293642-9293711)
chr1 (48-121)||(45193229-45193302)
chr1 (31-121)||(28281976-28282066)
chr1 (71-121)||(5384819-5384869)
chr1 (87-121)||(46535335-46535369)
chr1 (31-121)||(50323330-50323420)
chr1 (22-122)||(8255908-8256007)
[»] chr6 (10 HSPs)
chr6 (31-123)||(6817288-6817380)
chr6 (22-121)||(24068201-24068300)
chr6 (31-121)||(23595691-23595781)
chr6 (31-125)||(31513386-31513480)
chr6 (22-121)||(30269593-30269692)
chr6 (22-121)||(29419772-29419863)
chr6 (22-121)||(21289551-21289649)
chr6 (87-123)||(22351313-22351349)
chr6 (49-121)||(8464281-8464353)
chr6 (22-122)||(21528845-21528945)
[»] chr5 (22 HSPs)
chr5 (22-123)||(18942247-18942348)
chr5 (22-121)||(35758035-35758134)
chr5 (22-119)||(13956932-13957029)
chr5 (22-122)||(38040622-38040722)
chr5 (22-121)||(6273128-6273227)
chr5 (22-121)||(35456507-35456606)
chr5 (22-128)||(6459700-6459806)
chr5 (32-121)||(17644220-17644309)
chr5 (22-121)||(14351942-14352041)
chr5 (22-123)||(40143902-40144003)
chr5 (22-122)||(36745871-36745971)
chr5 (22-121)||(8761098-8761197)
chr5 (22-121)||(23015033-23015132)
chr5 (22-121)||(32383892-32383991)
chr5 (48-121)||(17421303-17421376)
chr5 (32-121)||(27194786-27194875)
chr5 (22-122)||(14635344-14635444)
chr5 (40-123)||(814795-814878)
chr5 (51-121)||(29823257-29823327)
chr5 (22-123)||(3752452-3752553)
chr5 (33-96)||(38892693-38892756)
chr5 (64-121)||(389700-389757)
[»] scaffold0043 (1 HSPs)
scaffold0043 (22-121)||(64345-64444)
[»] chr8 (23 HSPs)
chr8 (22-124)||(41726362-41726464)
chr8 (48-121)||(36833904-36833977)
chr8 (22-121)||(19726717-19726816)
chr8 (22-121)||(32493189-32493288)
chr8 (22-121)||(42063462-42063561)
chr8 (22-112)||(28761685-28761775)
chr8 (22-121)||(30360455-30360554)
chr8 (22-121)||(40485557-40485656)
chr8 (31-121)||(26403637-26403727)
chr8 (22-120)||(44056506-44056604)
chr8 (31-121)||(14910095-14910185)
chr8 (71-123)||(4455400-4455452)
chr8 (31-123)||(20821809-20821901)
chr8 (22-121)||(29867728-29867827)
chr8 (31-123)||(31008548-31008640)
chr8 (43-121)||(597234-597312)
chr8 (31-121)||(3655857-3655947)
chr8 (31-121)||(8014934-8015024)
chr8 (31-121)||(11031030-11031120)
chr8 (71-121)||(18656677-18656727)
chr8 (27-121)||(27845932-27846026)
chr8 (71-121)||(36658515-36658565)
chr8 (22-122)||(13487154-13487253)
[»] scaffold0116 (1 HSPs)
scaffold0116 (22-121)||(7839-7938)
[»] scaffold0231 (1 HSPs)
scaffold0231 (31-121)||(11046-11136)
[»] scaffold0070 (1 HSPs)
scaffold0070 (22-121)||(12721-12820)
[»] scaffold0712 (1 HSPs)
scaffold0712 (38-121)||(4948-5030)
[»] scaffold0709 (1 HSPs)
scaffold0709 (38-121)||(4968-5050)
[»] scaffold0242 (1 HSPs)
scaffold0242 (22-121)||(17856-17955)
[»] scaffold0036 (1 HSPs)
scaffold0036 (50-121)||(51909-51980)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 16198713 - 16198811
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16198713 tcagccatgcggttcaaccagtgacccagtggttcgac-atcgacccagtgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 16198811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 5418987 - 5418899
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaacta 119  Q
    |||||||||||||||| |||||||||||||||  ||||| | ||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  5418987 cggttcaaccagtgactcagtggttcgaccattaacccattaacccagtacctctgccgagtcgatgaccgagccgagttttaaaacta 5418899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 10198406 - 10198308
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactat 120  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||| |||||||| || ||||||||||| ||||||||||||||||||||||    
T  10198406 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagtgatccaatacccctgccgagtcgatgaccgagccgagttttaaaactat 10198308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 11734246 - 11734345
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  11734246 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 11734345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 29983334 - 29983235
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| | |||||||||||| |||| ||||||||||||||||||    
T  29983334 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccaccgagtcgatgaccgaaccgagttttaaaactatg 29983235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 45269463 - 45269554
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatgg 122  Q
    |||||| |||| |||| || |||||||||||| |||||| ||||||| ||||||  ||||||||||| ||||||||||||||||||||||||    
T  45269463 cggttcgaccaatgactcactggttcgaccattgacccagtgacccagtacctccgccgagtcgatgaccgagccgagttttaaaactatgg 45269554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 36858232 - 36858130
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| || | |  ||||||||||| |||||||||||||||||||||||    
T  36858232 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgagttttaaaactatg 36858133  T
Q  122 gtc 124  Q
    |||    
T  36858132 gtc 36858130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 16217019 - 16217108
Alignment:
Q  32 ggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||| |||| |||| ||||||||||||||| |||||| ||||||||||||  | | ||||||||| |||||||||||||||||||||||    
T  16217019 ggttcgaccaatgactcagtggttcgaccattgacccagtgacccaatacccatgctgagtcgatgaccgagccgagttttaaaactatg 16217108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 34259278 - 34259379
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||||||| |||||||||||||||  || || ||||| ||||||  | ||||||||| | |||||||||||||||||||||||    
T  34259278 tcagtcatgcggttcaaccagtgactcagtggttcgaccattaactcattgacctaatacccatgccgagtcgacgaccgagccgagttttaaaactatg 34259377  T
Q  122 gt 123  Q
    ||    
T  34259378 gt 34259379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 10992731 - 10992819
Alignment:
Q  33 gttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||||  ||||||||||||||  || || ||||||| |||| || ||||||||| |||||||||||||||||||||||||    
T  10992731 gttcaaccagtgacttagtggttcgaccattaactcattgacccagtacccctgccgagtcgacggccgagccgagttttaaaactatg 10992819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 36099692 - 36099791
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||| ||| |||||||||||||||||||||||    
T  36099692 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactatg 36099791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 34191916 - 34192006
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| |||| |||||||||||||||| ||||| ||| ||| |||| || | ||||||||  |||||||||||||||||||||||    
T  34191916 cggttcaaccaatgactcagtggttcgaccatcaacccagtgatccagtacccctgcagagtcgatcaccgagccgagttttaaaactatg 34192006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 44605936 - 44606037
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||| ||||| |||||| ||||||| |||| |  ||||||||||| ||||||||| |||||||||||||    
T  44605936 tcagtcatgcggttcgaccaatgactcagtggttcaaccattgacccattgacccagtaccccggccgagtcgatgaccgagccgaattttaaaactatg 44606035  T
Q  122 gt 123  Q
    ||    
T  44606036 gt 44606037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 46170731 - 46170638
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggtc 124  Q
    |||||| |||| |||| |||||||||||||||  ||||||||||||| |  | || ||||||||||| ||||||||| ||||||||||||||||    
T  46170731 cggttcgaccattgactcagtggttcgaccattaacccaatgacccagtgtccctgccgagtcgatgaccgagccgaattttaaaactatggtc 46170638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 14801973 - 14802065
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||| |||| |||| || |||||||||||| |||||| ||||| | |||| |  ||||||||||| |||||||||||||||||||||||||    
T  14801973 cggttcgaccaatgactcaatggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactatggt 14802065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 15248965 - 15249057
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||| |||| |||| || |||||||||||| |||||| ||||| | |||| |  ||||||||||| |||||||||||||||||||||||||    
T  15248965 cggttcgaccaatgactcaatggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactatggt 15249057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 30801767 - 30801675
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||| ||| | ||| ||||||||| ||||  || ||||||||||||||||||| |||| ||||||  ||||||||||||||||||||||||    
T  30801767 cggttcgacctgcgactcagtggttcaaccaatgatccaatgacccaatacctctcccgaatcgatgatcgagccgagttttaaaactatggt 30801675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 24096724 - 24096823
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| || ||| ||||||| |||| || |||| |||||| |||| ||||||||||||||||||    
T  24096724 tcagacatgcggttcgaccaatgactcagtggttcgaccattgatccagtgacccagtacccctgccgaatcgatgaccgaaccgagttttaaaactatg 24096823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 31813575 - 31813488
Alignment:
Q  34 ttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||| |||| |||||||||||||||  ||||| ||| ||| |||| || ||||||||||| ||||| |||||||||||||||||    
T  31813575 ttcaaccactgactcagtggttcgaccattaacccattgaaccagtacccctgccgagtcgatgaccgagtcgagttttaaaactatg 31813488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 33628272 - 33628360
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaacta 119  Q
    |||||| |||| ||||||| |||||| ||||| |||||| |||| || |||| || ||||||| ||| |||||||||||||||||||||    
T  33628272 cggttcgaccaatgacccaatggttcaaccattgacccagtgactcagtacccctgccgagtcaatgtccgagccgagttttaaaacta 33628360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 9822609 - 9822518
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatgg 122  Q
    |||||| |||| |||| || |||||||||||| ||| || |||||||||||| |  |||| ||||||  |||||||||||||||||||||||    
T  9822609 cggttcgaccaatgactcactggttcgaccattgactcagtgacccaatacccccgccgaatcgatgatcgagccgagttttaaaactatgg 9822518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 10724534 - 10724443
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatgg 122  Q
    |||||| |||| |||| || |||||||||||| ||| || |||||||||||| |  |||| ||||||  |||||||||||||||||||||||    
T  10724534 cggttcgaccaatgactcactggttcgaccattgactcagtgacccaatacccccgccgaatcgatgatcgagccgagttttaaaactatgg 10724443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 43779799 - 43779851
Alignment:
Q  71 tgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    ||||||||||||  ||||||||||||  |||| ||||||||||||||||||||    
T  43779799 tgacccaatacccttaccgagtcgatcaccgatccgagttttaaaactatggt 43779851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 1582254 - 1582155
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||| || |||| ||  ||||||||||| ||| || ||||||| | |  || | ||||||||| |||||||||||||||||||||||    
T  1582254 tcagtcatgcggttcaatcaatgactcaacggttcgaccattgactcattgacccagtgcacctgctgagtcgatgaccgagccgagttttaaaactatg 1582155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 8419980 - 8420031
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacc 82  Q
    |||||| |||||||||||| |||||||||||  |||||| ||||||||||||    
T  8419980 cggttcgaccagtgacccaatggttcgaccaatgacccagtgacccaatacc 8420031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 20623239 - 20623149
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| |||||||||| ||||||||| ||| || |||||| |  ||  ||||||||||||| |||  |||  |||||||||||||    
T  20623239 cggttcaaccaatgacccagtgattcgaccattgactcagtgacccgacgcccttaccgagtcgatgaccggtccggtttttaaaactatg 20623149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 31958647 - 31958739
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||| ||||||||| || |||||||||||  |||||| || ||||  ||||   ||||||||||  |||| |||| |||||||||||||||    
T  31958647 cggttcgaccagtgactcaatggttcgaccaatgacccagtggcccagaaccttagccgagtcgatcaccgatccgatttttaaaactatggt 31958739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 24776170 - 24776269
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||| | ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24776170 tcagccatgcagttcaaccaatgatccagtggttcgaccatcgacccagtgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 24776269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 4414514 - 4414415
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||| |||||| ||||||||||||||| |||||| ||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  4414514 tcagtcatgcggttcaacaagtgactcagtggttcgaccattgacccagtgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 4414415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 44352186 - 44352087
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||||||||||| |||||||||||||||| || ||||||| ||||| | ||||||||||| |||| ||||||||||||||||||    
T  44352186 tcagtcatgcggttcaaccagtgacccaatggttcgaccatcgactcagtgacccagtacctatgccgagtcgatgaccgaaccgagttttaaaactatg 44352087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 8132890 - 8132791
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||| |||| ||||||||| |||||  || || ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  8132890 tcagtcatgcggttcaaccaatgactcagtggttcaaccattaactcagtgacccagtacctctaccgagtcgatgaccgagccgagttttaaaactatg 8132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 25232675 - 25232774
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  25232675 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 25232774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 54822146 - 54822046
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||||||| ||||||||||| ||| ||| || ||||||| |||  || ||||||||||| |||||||||||||||||||||||    
T  54822146 tcagtcatgcggttcaaccagtgactcagtggttcgatcattgactcagtgacccagtacacctgccgagtcgatgaccgagccgagttttaaaactatg 54822047  T
Q  122 g 122  Q
    |    
T  54822046 g 54822046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 28359679 - 28359778
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||| || ||| ||| |||||||| ||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  28359679 tcagtcatgcggttcaatcaatgatccaatggttcgatcattgacccagtgacccaatacctctgccgagtcaatgaccgagccgagttttaaaactatg 28359778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 29695439 - 29695537
Alignment:
Q  25 gccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    ||||| ||||||||||||||||||| |  ||||||||||||| || ||||||| || || |  |||||||||| |||||||||||||||||||||||||    
T  29695439 gccatgcggttcaaccagtgacccaataattcgaccatcgactcagtgacccagtatctatgtcgagtcgatgaccgagccgagttttaaaactatggt 29695537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 1936511 - 1936612
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| || ||||||||||| ||||| || ||||||||||||||    
T  1936511 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccctgccgagtcgatgaccgagtcgggttttaaaactatg 1936610  T
Q  122 gt 123  Q
    ||    
T  1936611 gt 1936612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 2859507 - 2859419
Alignment:
Q  33 gttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||||||||||||||||||||||||| |||||| ||||||||||||  ||||||||||||  |||  | ||||||||||||||||    
T  2859507 gttcgaccagtgacccagtggttcgaccattgacccagtgacccaatacccttaccgagtcgatcaccggtctgagttttaaaactatg 2859419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 38519377 - 38519285
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||||||||||||| || ||||||||||||  ||||| ||||||||||||| |  | |||||||||  |||||||||||||||||||||||    
T  38519377 cggttcaaccagtgactcaatggttcgaccattaacccagtgacccaatacctttgtcaagtcgatggttgagccgagttttaaaactatggt 38519285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 11792483 - 11792383
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||  ||||||||||||||| |||||| ||||||| || | |  ||||||||||| |||||||||||||||||||||||    
T  11792483 tcagtcatgcggttcgaccaatgattcagtggttcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgagttttaaaactatg 11792384  T
Q  122 g 122  Q
    |    
T  11792383 g 11792383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 6354974 - 6355073
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||| | |||| || ||||||||||||  ||||| |||| ||  ||||||| |||||||||| |||||||||||||||||||||||    
T  6354974 tcagtcatgcggttcaactattgactcaatggttcgaccattaacccagtgactcagaacctctatcgagtcgatgaccgagccgagttttaaaactatg 6355073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 19916435 - 19916534
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||  ||  |||||||||||||||  | ||||||||||| ||||||| | | ||||||| |||||||||||||||||||||||    
T  19916435 tcagtcatgcggttcaaccaacgattcagtggttcgaccattaatccaatgacccagtacctctgctgtgtcgatgaccgagccgagttttaaaactatg 19916534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 43245729 - 43245819
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||| || || ||||||||||||  ||||| |||||||||||| ||  ||||||||| |||||| ||| |||||||||||||    
T  43245729 cggttcaaccagtaactcaatggttcgaccattaacccagtgacccaatacccctgtcgagtcgatagccgagtcgaattttaaaactatg 43245819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 55675510 - 55675420
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||| |||| ||||| ||||||||| |||| | ||||||| |||| ||  |||||||||| |||||||||||||||||||||||    
T  55675510 cggttcgaccaatgactcagtgattcgaccattgacctattgacccagtacccctgtcgagtcgatgaccgagccgagttttaaaactatg 55675420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 32988252 - 32988344
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||| |||| |||| ||||||||||||||  |||| | ||||||| ||||   ||||||||||||||||  ||||||||||||||||||||    
T  32988252 cggttcgaccaatgactcagtggttcgaccaatgacctagtgacccactaccctcaccgagtcgatggccggtccgagttttaaaactatggt 32988344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 23611541 - 23611640
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| | ||||| || | |  ||||||||||| |||| ||||||||||||||||||    
T  23611541 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattaacccagtatccccgccgagtcgatgaccgaaccgagttttaaaactatg 23611640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 24394143 - 24394073
Alignment:
Q  51 tggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||| |||||| ||||||| |||| |  ||||||||||| |||||||||||||||||| ||||    
T  24394143 tggttcgaccattgacccagtgacccagtacccccgccgagtcgatgaccgagccgagttttaaaattatg 24394073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 5360658 - 5360585
Alignment:
Q  47 ccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactat 120  Q
    |||||||||||||||| ||  || ||| ||||||||||||||||||||||  ||||  ||||||||||||||||    
T  5360658 ccagtggttcgaccattgattcagtgaaccaatacctctaccgagtcgattaccgattcgagttttaaaactat 5360585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 26203692 - 26203781
Alignment:
Q  33 gttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatgg 122  Q
    ||||||||| |||| |  ||||||||||||| || || ||||||| | |||||  ||||||||||  |||||||||||||||||||||||    
T  26203692 gttcaaccaatgactcgatggttcgaccatccactcagtgacccagtgcctctgtcgagtcgatgatcgagccgagttttaaaactatgg 26203781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 293554 - 293652
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaat-acctctaccgagtcgatggccgagccgagttttaaaactat 120  Q
    |||| ||| ||||||||||||||||||| ||||||||||| |||| || ||||||| | ||||| |||||||| ||| |||  |||| ||||||||||||    
T  293554 tcagtcatgcggttcaaccagtgacccaatggttcgaccaacgactcagtgacccagtgacctc-accgagtcaatgaccggtccgatttttaaaactat 293652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 8261055 - 8261138
Alignment:
Q  38 accagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||||||| |||||| ||||| |||||| |||| ||  ||| |||||||||| ||| || ||||||||||||||||||||    
T  8261055 accaatgacccaatggttcaaccattgacccagtgactcagcacccctaccgagtcaatgtccaagccgagttttaaaactatg 8261138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 8274472 - 8274555
Alignment:
Q  38 accagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||||||| |||||| ||||| |||||| |||| ||  ||| |||||||||| ||| || ||||||||||||||||||||    
T  8274472 accaatgacccaatggttcaaccattgacccagtgactcagcacccctaccgagtcaatgtccaagccgagttttaaaactatg 8274555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 12704681 - 12704759
Alignment:
Q  43 tgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||||||||||||||| |||  | ||||||| ||||  | || |||||||| |||||||||||||||||||||||    
T  12704681 tgactcagtggttcgaccattgacttagtgacccagtacccatgcctagtcgatgaccgagccgagttttaaaactatg 12704759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 25510577 - 25510487
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| |||||||||||||| ||||  || ||| |||||||  |||  ||||||||||| | |||  ||||||||||||||||||    
T  25510577 cggttcaaccaatgacccagtggttcaaccaatgaaccagtgacccagcacccttaccgagtcgacgaccggtccgagttttaaaactatg 25510487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 2039171 - 2039081
Alignment:
Q  32 ggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatgg 122  Q
    ||||||||||||||| |||||||||||||   ||| || |||||||||| |  ||||||||||||| | | || |  ||||||||||||||    
T  2039171 ggttcaaccagtgactcagtggttcgaccgatgactcattgacccaataaccttaccgagtcgatgactgggcaggtttttaaaactatgg 2039081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 2323165 - 2323229
Alignment:
Q  51 tggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaa 115  Q
    |||||||||||||||| || |||  || | ||||| |||||| |||| |||||||||||||||||    
T  2323165 tggttcgaccatcgactcagtgattcagtgcctctgccgagttgatgaccgagccgagttttaaa 2323229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 9321044 - 9321012
Alignment:
Q  92 tcgatggccgagccgagttttaaaactatggtc 124  Q
    |||||| ||||||||||||||||||||||||||    
T  9321044 tcgatgaccgagccgagttttaaaactatggtc 9321012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 51537193 - 51537293
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||||||||||||||||||||||||  ||||| |||||||||||| || ||||||||||| |||||||||||||||||||||||    
T  51537193 tcagacatgcggttcaaccagtgacccagtggttcgaccattaacccagtgacccaatacccctgccgagtcgatgaccgagccgagttttaaaactatg 51537292  T
Q  122 g 122  Q
    |    
T  51537293 g 51537293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 42217165 - 42217264
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||||||| |||||||||||||||  || |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  42217165 tcagtcatgcggttcaaccagtgactcagtggttcgaccattaactcaatgacccagtacctttaccgagtcgatgaccgagccgagttttaaaactatg 42217264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 29727836 - 29727737
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||| |||||| ||||||||| |||||  |||||||||||||||||| || |||| |||||| |||||||||||||||||||||||    
T  29727836 tcagtcatgcggttcaactagtgactcagtggttcaaccattaacccaatgacccaatacccctgccgaatcgatgaccgagccgagttttaaaactatg 29727737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 55258088 - 55258187
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| | |||||||||||| |||||||||||||||||||||||    
T  55258088 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccaccgagtcgatgaccgagccgagttttaaaactatg 55258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 15100703 - 15100604
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||| ||||||| |||||||||||||||  |||||||||||||||| |  || ||||||||||  ||||||||||||||||||||||    
T  15100703 tcagtcatgcggttcaatcagtgactcagtggttcgaccattaacccaatgacccaatatccttatcgagtcgatgatcgagccgagttttaaaactatg 15100604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 35054713 - 35054812
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||||||||||| ||||||||||||  || || ||||||| ||||  | ||||||||||| |||||||||||||||||||||||    
T  35054713 tcagtcatgcggttcaaccagtgacccaatggttcgaccattaactcactgacccagtacccatgccgagtcgatgaccgagccgagttttaaaactatg 35054812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 41462358 - 41462457
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||| ||||||||  |||||||||||||||| || ||||||| ||||| |  |||||||||| |||||||||||||||||||||||    
T  41462358 tcagtcatgcggttcaacaagtgacccgatggttcgaccatcgactcagtgacccagtacctatgtcgagtcgatgaccgagccgagttttaaaactatg 41462457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 23241866 - 23241965
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||  ||||||||||||||| |||||| |||||||||||| |  ||||||||||| ||||||||| |||||||||||||    
T  23241866 tcagtcatgcggttcgaccaatgattcagtggttcgaccattgacccattgacccaatacccccgccgagtcgatgaccgagccgaattttaaaactatg 23241965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 30465090 - 30465189
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||||||| ||||||||| |||||||||||||    
T  30465090 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgaattttaaaactatg 30465189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 42907868 - 42907761
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||| |||| |||||||||||||||  ||| ||||||||| | || || |||||||||   |||||||||||||||||||||||    
T  42907868 tcagtcatgcggttcaaccaatgactcagtggttcgaccattaacctaatgacccagtgcccctgccgagtcgacaaccgagccgagttttaaaactatg 42907769  T
Q  122 gtcgtaag 129  Q
    | ||||||    
T  42907768 gacgtaag 42907761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 53351270 - 53351171
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||  ||| ||||||||| |||||  ||| ||||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  53351270 tcagtcatgcggttcaaccaacgactcagtggttcaaccattaacctaatgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 53351171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 11575084 - 11574994
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| ||||||  |||||||||||||||  |||||||||| ||||| | |||||||||||  |||| |||||||||||||||||    
T  11575084 cggttcaaccaatgacccgatggttcgaccatcgattcaatgacccagtacctatgccgagtcgatgatcgagtcgagttttaaaactatg 11574994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 39850785 - 39850695
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||| |||| ||||||||||||||| |||||| ||||| | |||| |  ||||||||||| |||||||||||||||||||||||    
T  39850785 cggttcgaccaatgactcagtggttcgaccattgacccattgacctagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 39850695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 11412517 - 11412594
Alignment:
Q  43 tgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactat 120  Q
    |||| ||||||||||||||  |||||| ||||||||||||  | ||||||||||| ||||||||||||||||||||||    
T  11412517 tgactcagtggttcgaccaatgacccagtgacccaatacccttgccgagtcgatgaccgagccgagttttaaaactat 11412594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 37599877 - 37599976
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| || ||| ||||||| |||| |  || |||||||| |||||||||||||||||||||||    
T  37599877 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgatccattgacccagtacccccgccaagtcgatgaccgagccgagttttaaaactatg 37599976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 44201199 - 44201109
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||| | ||||||  |||||||||||||||| || ||   || | ||||||||||||||||| |||||||||||||||||||||||    
T  44201199 cggttcaacaaatgacccgatggttcgaccatcgactcagtgcttcagtgcctctaccgagtcgatgaccgagccgagttttaaaactatg 44201109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 29025358 - 29025259
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| || |||||| ||||| |||||| ||||||| |||| |  ||||||||||| |||||| ||||||||||||||||    
T  29025358 tcagtcatgcggttcgaccaatgactcactggttcaaccattgacccattgacccagtacccccgccgagtcgatgaccgagctgagttttaaaactatg 29025259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 33634973 - 33634883
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||| |||| ||||||||||||||| |||||| | ||||| |||| |  |||||||||||  ||| ||||||||||||||||||    
T  33634973 cggttcgaccaatgactcagtggttcgaccattgacccattaacccagtacccccgccgagtcgatgatcgaaccgagttttaaaactatg 33634883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 45096378 - 45096288
Alignment:
Q  32 ggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaata-cctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||  ||| ||| |||||||||||| ||||||  |||||| || || || ||||||| |||||||||||||||||||||||||||    
T  45096378 ggttcaaccgatgatccaatggttcgaccattgacccatcgacccagtaacccctcccgagtcaatggccgagccgagttttaaaactatg 45096288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 10259228 - 10259297
Alignment:
Q  52 ggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||  ||||| ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  10259228 ggttcgaccattaacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 10259297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 11676262 - 11676333
Alignment:
Q  49 agtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||||| |||||| ||||||| |||| |  ||||||||||| ||||||| |||||||||||||||    
T  11676262 agtggttcgaccattgacccattgacccagtaccccg-ccgagtcgatgaccgagccaagttttaaaactatg 11676333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 45104126 - 45104214
Alignment:
Q  33 gttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| |||||||| |||||||||||||||| |||||| ||||||| |||   |||||| |||||  |||  ||||||||||||||||||    
T  45104126 gttcgaccagtgatccagtggttcgaccattgacccagtgacccagtactcttaccgattcgatcaccggtccgagttttaaaactatg 45104214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 2849269 - 2849367
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| || || |||||||||  ||||| ||||||| || | | |||||||||||| |||||||||||||||||||||||    
T  2849269 tcagtcatgcggttcgaccaatgactcaatgattcgaccattaacccattgacccagtatccc-accgagtcgatgaccgagccgagttttaaaactatg 2849367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 11018740 - 11018705
Alignment:
Q  86 accgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||| |||||||||||||||||||||||    
T  11018740 accgagtcgatgaccgagccgagttttaaaactatg 11018705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 15569849 - 15569768
Alignment:
Q  39 ccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactat 120  Q
    |||||||||||||||||| ||||  |||||| ||||||| || ||  |||||||| ||| |||  | |||||||||||||||    
T  15569849 ccagtgacccagtggttcaaccaatgacccagtgacccagtaacttcaccgagtcaatgaccggtctgagttttaaaactat 15569768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 50007298 - 50007359
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacct 83  Q
    |||| ||| ||||||||||||| ||||  |||||||||||||||| || ||||||| |||||    
T  50007298 tcagtcatgcggttcaaccagtaacccgatggttcgaccatcgactcagtgacccagtacct 50007359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 52404395 - 52404448
Alignment:
Q  71 tgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggtc 124  Q
    ||||||| ||||  |||||||||||||  |||| ||||||||||||||||||||    
T  52404395 tgacccagtacccataccgagtcgatgatcgaggcgagttttaaaactatggtc 52404448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 21603600 - 21603699
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaat-acctctaccgagtcgatggccgagccgagttttaaaactat 120  Q
    |||| ||||| ||||||||||||||||| |||||| ||||  |||| | ||||||| | |||| |||||| |||||| || |||||  ||||||||||||    
T  21603600 tcagtcatactgttcaaccagtgacccaatggttcaaccaatgacctagtgacccagtgacct-taccgaatcgatgaccaagccggtttttaaaactat 21603698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 27002590 - 27002522
Alignment:
Q  53 gttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||||| |||||| |||| || ||||  | ||||||| ||| |||||||||||||||||||||||    
T  27002590 gttcaaccattgacccagtgactcagtacccttgccgagtcaatgtccgagccgagttttaaaactatg 27002522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 53605829 - 53605777
Alignment:
Q  71 tgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    ||||||| |||||  | |||||||||| |||| ||||||||||||||||||||    
T  53605829 tgacccagtaccttgatcgagtcgatgtccgatccgagttttaaaactatggt 53605777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 27905721 - 27905622
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||||||||||||||  ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  27905721 tcagtcatacggttcaaccgatgacccagtggttcgaccatctacccagtgacccaatgcctctaccgagtcgatggccaagccgtgttttaaaactatg 27905622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 21800698 - 21800788
Alignment:
Q  33 gttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||  |||| |||||||||||||| |||||||||||||||||||||||||    
T  21800698 gttcaaccagtgacccagtgattcgaccattgacccagtgacccggtacccctaccgagtcgatgaccgagccgagttttaaaactatggt 21800788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 35305300 - 35305400
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  35305300 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccagtgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 35305399  T
Q  122 g 122  Q
    |    
T  35305400 g 35305400  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 16106719 - 16106818
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||||||| |||||||||||||||  ||||| |||||||||||   | ||||||||||| |||||||||||||||||||||||    
T  16106719 tcagtcatgcggttcaaccagtgactcagtggttcgaccattaacccagtgacccaatactcttgccgagtcgatgaccgagccgagttttaaaactatg 16106818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 3988804 - 3988705
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||| ||||||| || ||||||||| |||||||||||||| || | || ||||||| ||| |||||||||||||||||||||||    
T  3988804 tcagtcatgcggttcaaccaatgacccaatgattcgaccattgacccaatgacccagtatccctgccgagtcaatgaccgagccgagttttaaaactatg 3988705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 29781515 - 29781416
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||| ||||||||||||||||||  || ||||||||||||| |||| | |||||  |||| ||||||||| | |||||||||||||||||||||||    
T  29781515 tcagccatgcggttcaaccagtgacccgatgattcgaccatcgactcaattatccaatgtctctgccgagtcgaagaccgagccgagttttaaaactatg 29781416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 17513108 - 17513020
Alignment:
Q  33 gttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  17513108 gttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 17513020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 24128852 - 24128753
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||  ||||||||||||||| |||||| ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  24128852 tcagtcatgcggttcgaccaatgattcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 24128753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 6065515 - 6065614
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||| ||||||||||||||||||||  ||||| |||| || |||| || |||| |||||| |||  ||||||||||||||||||    
T  6065515 tcagtcatgcggttcaaccaatgacccagtggttcgaccattaacccagtgactcagtacccctgccgaatcgatgaccggaccgagttttaaaactatg 6065614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 10810562 - 10810661
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||  |||||||||||||||| |||  ||||| ||||||| ||||  | |||||||||||  ||||||||||||||||||||||    
T  10810562 tcagtcatgcggttcaaccgatgacccagtggttcgatcattaacccattgacccagtaccgttgccgagtcgatgatcgagccgagttttaaaactatg 10810661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 18540731 - 18540657
Alignment:
Q  48 cagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatgg 122  Q
    ||||||||||||||  |||||||||| ||| |||| || |||||||||||  |||||||||||||||||||||||    
T  18540731 cagtggttcgaccagtgacccaatgatccagtaccccttccgagtcgatgatcgagccgagttttaaaactatgg 18540657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 23293190 - 23293291
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| |||||||||||||||  ||||| ||||||| ||||    ||||||| ||| |||||||||||||||||||||||    
T  23293190 tcagtcatgcggttcgaccaatgactcagtggttcgaccattcacccattgacccagtaccctcgccgagtcaatgaccgagccgagttttaaaactatg 23293289  T
Q  122 gt 123  Q
    ||    
T  23293290 gt 23293291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 37484493 - 37484396
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggtcgtaa 128  Q
    |||||| ||||||||| || |||||||| ||   ||||||||||||| || |  |||||||||||   ||||||||||||||||||||||||||||||    
T  37484493 cggttcgaccagtgactcaatggttcgatcaataacccaatgacccagtatccttaccgagtcgacaaccgagccgagttttaaaactatggtcgtaa 37484396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 16457764 - 16457851
Alignment:
Q  34 ttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||  ||||||||| |||||  || || ||||||||||||  | |||| |||||| |||||||||||||||||||||||    
T  16457764 ttcaaccagtgattcagtggttccaccattaactcattgacccaatacccatgccgaatcgatgaccgagccgagttttaaaactatg 16457851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 19882029 - 19881938
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatgg 122  Q
    |||||| |||| |||| || |||||||||||| |||| | ||||||| |||| |  ||||||| ||| ||||||||||||||||||||||||    
T  19882029 cggttcgaccaatgactcactggttcgaccattgaccaagtgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactatgg 19881938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 32878727 - 32878817
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||| |||| || |||||||||||| ||||||  |||||| |||| |  ||||||||| | |||||||||||||||||||||||    
T  32878727 cggttcgaccaatgactcattggttcgaccattgacccagggacccagtacccccgccgagtcgacgaccgagccgagttttaaaactatg 32878817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 13814956 - 13814896
Alignment:
Q  61 atcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||||| | ||||||||||||||||||||| |||||| || |||||||||||||    
T  13814956 atcgactcaatgatcaaatacctctaccgagtcgatgaccgagctgaattttaaaactatg 13814896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 37255998 - 37256090
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||||||||  ||| || |||||||||||| || ||| ||| ||| | ||||||||||||||||| |||| |||  |||||||||||||||    
T  37255998 cggttcaaccaacgactcaatggttcgaccattgaaccattgatccagtgcctctaccgagtcgatgaccgaaccggtttttaaaactatggt 37256090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 12365537 - 12365636
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||||||||||||||||||||||   | ||| ||||||| ||||   ||||| |||| | |||  ||||||||||||||||||    
T  12365537 tcagtcatgcggttcaaccagtgacccagtggttcgaccaataaaccagtgacccagtaccctaaccgaatcgacgaccggtccgagttttaaaactatg 12365636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 39678403 - 39678304
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||| ||||||||| ||| || ||||||| ||||||| ||||||||||| | ||  ||| |||||||||||||    
T  39678403 tcagtcatgcggttcgaccaatgactcagtgattcgaccattgactcattgacccagtacctctgccgagtcgatgacagaatcgaattttaaaactatg 39678304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 41746934 - 41746863
Alignment:
Q  52 ggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||||||| |||| || ||||||| ||||| |||| | |||||| ||||| |||||||||||||||||||    
T  41746934 ggttcgaccaacgactcagtgacccagtacctatacctaatcgatgaccgagtcgagttttaaaactatggt 41746863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 30963012 - 30963102
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||||||  | ||||||||||||| ||| || || | |||||||  ||||||||||||  |||  ||||||||||||||||||    
T  30963012 cggttcaaccagtgattcggtggttcgaccattgactcagtgtctcaatacccttaccgagtcgattaccggtccgagttttaaaactatg 30963102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 40404401 - 40404311
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||||||| |||||||||||||||   | |||||||| || || |  ||||||||||||| |||| |||| |||||||||||||    
T  40404401 cggttcgaccagtgatccagtggttcgaccaataatccaatgactcactaaccttaccgagtcgatgaccgatccgatttttaaaactatg 40404311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 22315205 - 22315294
Alignment:
Q  32 ggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||||||  |||||||||||||| ||| |  ||||| | |||  || ||||||| ||| ||||| |||||||||||||||||    
T  22315205 ggttcaaccagtgactgagtggttcgaccattgactcggtgacctagtacacctgccgagtcaatgaccgagacgagttttaaaactatg 22315294  T

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Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 7153535 - 7153437
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| |||||||||||||||  | | | ||||||| |||| |   |||||||||| |||||||||||||||||||||||    
T  7153535 tcagtcatgcggttcgaccaatgactcagtggttcgaccattaatc-attgacccagtacccccgtcgagtcgatgaccgagccgagttttaaaactatg 7153437  T

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Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 37254847 - 37254937
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaat-acctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||||||||| |||||| ||||  ||| || ||||||| | ||||| |||||||| ||| |||  ||||||||||||||||||    
T  37254847 cggttcaaccagtgacccaatggttcaaccaatgactcagtgacccagtaacctc-accgagtcaatgaccggtccgagttttaaaactatg 37254937  T

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Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 39761879 - 39761962
Alignment:
Q  38 accagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| |||| |||||||||||||||   |||||||||| ||||| |||| ||| || ||| |||| |||| |||||||||||||    
T  39761879 accaatgactcagtggttcgaccattatcccaatgacctaatacgtctatcgaatcaatgaccgaaccgaattttaaaactatg 39761962  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 5560763 - 5560817
Alignment:
Q  67 ccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| ||||   ||||||||||||||||  ||||||||||||||||||    
T  5560763 ccaatgacccactaccctcaccgagtcgatggccggtccgagttttaaaactatg 5560817  T

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Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 29523952 - 29523986
Alignment:
Q  87 ccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| |||||||||||||||||||||||    
T  29523952 ccgagtcgatgaccgagccgagttttaaaactatg 29523986  T

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Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 39061974 - 39062024
Alignment:
Q  71 tgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||| |  ||||||||||| ||||||||| |||||||||||||    
T  39061974 tgacccaatacccccgccgagtcgatgaccgagccgaattttaaaactatg 39062024  T

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Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 43869949 - 43870006
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaat 79  Q
    |||| ||| ||||||||||||||||||| ||||||||||| |||| || ||| |||||    
T  43869949 tcagtcatgcggttcaaccagtgacccaatggttcgaccaacgactcagtgatccaat 43870006  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 37315003 - 37315039
Alignment:
Q  87 ccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||| |||||| |||||||||||||||||||||||||    
T  37315003 ccgaatcgatgaccgagccgagttttaaaactatggt 37315039  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 16914494 - 16914596
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||  ||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  16914494 tcagtcatgcggttcaattagtgacccagtggttcgaccatcgacccagtgacccaatgtctctatcgagtcgatggtcgagccgagttttaaaactatg 16914593  T
Q  122 gtc 124  Q
    |||    
T  16914594 gtc 16914596  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 3252325 - 3252224
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||||||| ||||||||| |||||  || || ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  3252325 tcagtcatgcggttcaaccagtgactcagtggttcaaccattaactcagtgacccagtacctctaccgagtcgatgaccgagccgagttttaaaactatg 3252226  T
Q  122 gt 123  Q
    ||    
T  3252225 gt 3252224  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 16914600 - 16914691
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatgg 122  Q
    ||||||||  |||||| |||||||| ||||||||||||||||||||||| |||||||| |||| ||||| ||| ||||||||||||||||||    
T  16914600 cggttcaattagtgactcagtggtttgaccatcgacccaatgacccaatgcctctaccaagtcaatggctgagtcgagttttaaaactatgg 16914691  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 32364220 - 32364121
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||||||||||||||||||||||||  |||||  ||||||||||| ||  |||||||||| ||||||||| |||||||||||||    
T  32364220 tcagtcatgcggttcaaccagtgacccagtggttcgaccattaacccagcgacccaatacccctgtcgagtcgatgaccgagccgaattttaaaactatg 32364121  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 33690249 - 33690159
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||  ||| |||||||||||||||  ||||||||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  33690249 cggttcaaccaacgactcagtggttcgaccattaacccaatgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 33690159  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 42866377 - 42866276
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  42866377 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 42866278  T
Q  122 gt 123  Q
    ||    
T  42866277 gt 42866276  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 44410802 - 44410712
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||||||| |||||||||||||||  ||||| ||||||| ||||  | ||||||||||| |||| ||||||||||||||||||    
T  44410802 cggttcaaccagtgactcagtggttcgaccattaacccagtgacccagtacccttgccgagtcgatgaccgaaccgagttttaaaactatg 44410712  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 28234898 - 28234799
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||| ||| |||||||||||||||||||||||    
T  28234898 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactatg 28234799  T

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Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 37034882 - 37034981
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||||||||||||||||||| |||||| | ||||| ||||  | |||||||||||  ||||||||||||||||||||||    
T  37034882 tcagtcatgcggttcgaccaatgacccagtggttcgaccattgacccagtaacccagtacccatgccgagtcgatgatcgagccgagttttaaaactatg 37034981  T

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Target: chr1; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 962509 - 962599
Alignment:
Q  32 ggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatgg 122  Q
    ||||||||||||||| |||||||||||||||  ||  | ||||| | ||||| | ||||||||||| ||||||||||||||||||||||||    
T  962509 ggttcaaccagtgactcagtggttcgaccattaacttattgacctagtacctatgccgagtcgatgaccgagccgagttttaaaactatgg 962599  T

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Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 43064723 - 43064806
Alignment:
Q  38 accagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||||||||||||||||| ||||||||||||||||||   ||||||||||||  |||   |||||||||||||||||    
T  43064723 accagtaacccagtggttcgaccattgacccaatgacccaatacacttaccgagtcgatcaccggttcgagttttaaaactatg 43064806  T

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Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 44257869 - 44257770
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| | ||||||||||||| ||| || ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  44257869 tcagtcatgcggttcgaccaatgactcggtggttcgaccattgactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 44257770  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 18032375 - 18032287
Alignment:
Q  33 gttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||||| |||||||||||||||  || || ||| ||| ||||  | ||||||||| | |||||||||||||||||||||||    
T  18032375 gttcaaccagtgactcagtggttcgaccattaactcattgatccagtacccatgccgagtcgacgaccgagccgagttttaaaactatg 18032287  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 3355499 - 3355400
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||| ||||||||| |||||| ||||||| || | |  ||||||||||| ||||||||| |||||||||||||    
T  3355499 tcagtcatgcggttcgaccaatgactcagtgattcgaccattgacccattgacccagtatccccgccgagtcgatgaccgagccgaattttaaaactatg 3355400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 24638798 - 24638702
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||||||||||||   ||||||||  || || ||||||| ||||  | ||||||||||| |||||| ||||||||||||||||    
T  24638798 tcagtcatgcggttcaaccagtgacccagt---tcgaccattaactcactgacccactacccatgccgagtcgatgaccgagctgagttttaaaactatg 24638702  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 1846926 - 1846998
Alignment:
Q  49 agtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||||  ||||| | ||||| ||||||  |||||||||||  ||||||||||||||||||||||    
T  1846926 agtggttcgaccattaacccattaacccagtacctccgccgagtcgatgatcgagccgagttttaaaactatg 1846998  T

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Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 3794244 - 3794153
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactat 120  Q
    |||| ||| ||||||||||| |||| |||||||||||||||  ||||||||||||| ||       |||||||||| | ||||||||||||||||||||    
T  3794244 tcagtcatgcggttcaaccaatgactcagtggttcgaccattaacccaatgacccagta-------cgagtcgatgactgagccgagttttaaaactat 3794153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 20726071 - 20725983
Alignment:
Q  33 gttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||||  |||||||||||||||  || || ||||||| || |  |  |||||||||| |||||||||||||||||||||||    
T  20726071 gttcaaccagtgagtcagtggttcgaccattaactcattgacccagtatccatgtcgagtcgatgaccgagccgagttttaaaactatg 20725983  T

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Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 49241741 - 49241642
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||| |||||||||||  ||| | |||||||||||||  ||||||||| ||| || | ||  ||| |||||| ||||||||| |||||||||||||    
T  49241741 tcagccatgcggttcaaccaacgactcggtggttcgaccattaacccaatgatccagtatccctgtcgaatcgatgaccgagccgaattttaaaactatg 49241642  T

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Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 20117857 - 20117947
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| | || || |||||||||||| ||||||||||| || || | ||||||||| |||| |||||||   |||||||||||||    
T  20117857 cggttcaaccaataactcaatggttcgaccattgacccaatgactcagtatccctaccgagttgatgaccgagccagtttttaaaactatg 20117947  T

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Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 31986098 - 31986188
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| |||||||||||||| ||||  || ||| |||||||  |||  ||||||||||| | |||  ||||||||||||||||||    
T  31986098 cggttcaaccaatgacccagtggttcaaccaatgaaccagtgacccagcacccttaccgagtcgacgaccggtccgagttttaaaactatg 31986188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 3014186 - 3014274
Alignment:
Q  32 ggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||| |||| |||||||||||||||  | ||| ||||||| |||| || ||||||||||   |||| |||||||||||||||||    
T  3014186 ggttcaaccaatgactcagtggttcgaccattaatccagtgacccagtacccctgccgagtcgat-aacgagacgagttttaaaactatg 3014274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 9293711 - 9293642
Alignment:
Q  52 ggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| |||||| ||||||| |||| |   ||||||||||  ||||||||||||||||||||||    
T  9293711 ggttcgaccattgacccattgacccagtacccccgtcgagtcgatgatcgagccgagttttaaaactatg 9293642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 45193229 - 45193302
Alignment:
Q  48 cagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||||  |||||| |||||||  |||  | |||||||||||  ||||||||||||||||||||||    
T  45193229 cagtggttcgaccaatgacccagtgacccagcacccttgccgagtcgatgatcgagccgagttttaaaactatg 45193302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 28282066 - 28281976
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaat-acctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||||||||| |||||| ||||  ||| || ||||||| | ||||| |||||||| ||| |||  ||||||||||||||||||    
T  28282066 cggttcaaccagtgacccaatggttcaaccaatgactcagtgacccagtaacctc-accgagtcaatgaccggtccgagttttaaaactatg 28281976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 5384819 - 5384869
Alignment:
Q  71 tgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||| ||||| |||||| |||||| ||||||||| |||||||||||||    
T  5384819 tgacccagtacctttaccgaatcgatgaccgagccgaattttaaaactatg 5384869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 46535335 - 46535369
Alignment:
Q  87 ccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| |||||||||||||||||||||||    
T  46535335 ccgagtcgatgaccgagccgagttttaaaactatg 46535369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 50323420 - 50323330
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||||||||| | |||||||||||   ||||| ||||||| || |  |||||||||||   |||| ||||||||||||||||||    
T  50323420 cggttcgaccagtgacctaatggttcgaccaataacccagtgacccagtatccttaccgagtcgacaaccgaaccgagttttaaaactatg 50323330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 8256007 - 8255908
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||||||||||| |||| || || ||| | ||| || ||||||||  | ||||||| ||||||| ||  ||||| ||| |||||||||||||    
T  8256007 tcagccatacggttcaaccaatgactcaatgtttcaatcattga-ccaatgacttagtacctctgccgagtcaatatccgagtcgaattttaaaactatg 8255909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 6817380 - 6817288
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||    
T  6817380 cggttcaaccagtgactcagtggttcgaccattaacccaatgacccagtacccttaccgagtcgatgaccgagccgagttttaaaactatggt 6817288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 24068201 - 24068300
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| |||||||||||| |  ||||||||||| |||||||||||||||||||||||    
T  24068201 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccaatacccccgccgagtcgatgaccgagccgagttttaaaactatg 24068300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 23595781 - 23595691
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| |||| |||||||||||||||| ||||| ||||||| |||| || ||||||||||  |||||||||||||||||||||||    
T  23595781 cggttcaaccaatgactcagtggttcgaccatcaacccagtgacccagtacccctgccgagtcgatcaccgagccgagttttaaaactatg 23595691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 31513386 - 31513480
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggtcg 125  Q
    |||||| |||| ||||||| |||||| ||||| |||||| |||| || |||| || ||||||| ||| ||||||||||||||||||||| |||||    
T  31513386 cggttcgaccaatgacccaatggttcaaccattgacccattgactcagtaccccttccgagtcaatgtccgagccgagttttaaaactaaggtcg 31513480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 30269692 - 30269593
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| ||||  ||| |||||||||||||||  || || ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  30269692 tcagtcatgcggttcgaccaacgactcagtggttcgaccattaactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 30269593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 29419772 - 29419863
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||||||| |||||||| ||||||        ||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  29419772 tcagtcatgcggttcaaccagtgactcagtggtttgaccat--------tgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 29419863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 21289649 - 21289551
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| || |||||||||||| |||||| ||||||| |||| |  ||||||||||| ||||||||||| | |||||||||    
T  21289649 tcagtcatgcggttcgaccaatgactcactggttcgaccattgacccattgacccagtacc-ccgccgagtcgatgaccgagccgagtatgaaaactatg 21289551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 22351313 - 22351349
Alignment:
Q  87 ccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    ||||||||||| |||||||||||||||||||||||||    
T  22351313 ccgagtcgatgaccgagccgagttttaaaactatggt 22351349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 8464353 - 8464281
Alignment:
Q  49 agtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||||  || || ||||||| ||| ||| |||||  |||| ||||||||| |||||||||||||    
T  8464353 agtggttcgaccattaactcagtgacccagtacatctgccgagctgatgaccgagccgaattttaaaactatg 8464281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 21528845 - 21528945
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| ||||||||||||||| ||  ||||  |||||  ||||||| ||||   |||||||||||  |||  ||||||||||||||||||    
T  21528845 tcagtcatgcggttcgaccagtgacccagtgattgaaccaatgaccctgtgacccagtaccctgaccgagtcgatcaccggtccgagttttaaaactatg 21528944  T
Q  122 g 122  Q
    |    
T  21528945 g 21528945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 18942348 - 18942247
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||||| | |||||||||||||||| |||||| ||||||  |||| |||||||||||||| |||||||||||||||||||||||    
T  18942348 tcagtcatgcggttcaaccagtcatccagtggttcgaccattgacccagtgacccggtacccctaccgagtcgatgaccgagccgagttttaaaactatg 18942249  T
Q  122 gt 123  Q
    ||    
T  18942248 gt 18942247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 35758134 - 35758035
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| ||||||  ||||||||||| |||||||||||||||||||||||    
T  35758134 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccactgacccagtacctccgccgagtcgatgaccgagccgagttttaaaactatg 35758035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 13957029 - 13956932
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaacta 119  Q
    |||| ||| |||||||||||||||| |||||||||||||||  || || ||||||| ||||| | ||||||||||| |||||||||||||||||||||    
T  13957029 tcagtcatgcggttcaaccagtgactcagtggttcgaccattaactcattgacccagtacctatgccgagtcgatgaccgagccgagttttaaaacta 13956932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 38040722 - 38040622
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| ||||||  |||| |||||| |||||||||||||||||||||||    
T  38040722 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacctccgccgaatcgatgaccgagccgagttttaaaactatg 38040623  T
Q  122 g 122  Q
    |    
T  38040622 g 38040622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 6273227 - 6273128
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| |||||||||| |||| |||| |||||||||||||||  ||||||| ||||| | || || ||||||||||| |||||||||||||||||||||||    
T  6273227 tcagtcatacggttcgaccattgactcagtggttcgaccattaacccaataacccagtgcccctgccgagtcgatgaccgagccgagttttaaaactatg 6273128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 35456606 - 35456507
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||||||| ||||||||||||||| || ||||||| ||| |||| || || ||| |||| |||||||||||||||||||||||    
T  35456606 tcagtcatgcggttcaaccagtgactcagtggttcgaccattgatccaatgaaccagtacccctcccaagttgatgaccgagccgagttttaaaactatg 35456507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 6459806 - 6459700
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||||||||||||||||||||||||  || || ||||||| ||||  | ||||||||| | |||||| ||||||||||||||||    
T  6459806 tcagtcatgcggttcaaccagtgacccagtggttcgaccattaactcattgacccagtacccatgccgagtcgacgaccgagctgagttttaaaactatg 6459707  T
Q  122 gtcgtaa 128  Q
    || ||||    
T  6459706 gttgtaa 6459700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 17644220 - 17644309
Alignment:
Q  32 ggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||| |||| ||| |||||||||||||||| |||||| |||||| ||||| ||||||| |||||| ||||| |||||||||||||||||    
T  17644220 ggttcgaccattgatccagtggttcgaccattgacccagtgacccgatacccctaccgaatcgatgaccgagtcgagttttaaaactatg 17644309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 14351942 - 14352041
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||| | |||| |||||||||||||||  || || ||| ||||| || |||||||||||||| |||||||||||||||||||||||    
T  14351942 tcagtcatgcggttcaactaatgactcagtggttcgaccattaactcactgatccaatgcccctaccgagtcgatgaccgagccgagttttaaaactatg 14352041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 40144003 - 40143902
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| |||| || |  |||  ||||||||||| |||||||||||||||||||||||    
T  40144003 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgactcagtttctccgccgagtcgatgaccgagccgagttttaaaactatg 40143904  T
Q  122 gt 123  Q
    ||    
T  40143903 gt 40143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 36745871 - 36745971
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||  |  |||| |||||| |||||||||||||||||||||||    
T  36745871 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtactcccgccgaatcgatgaccgagccgagttttaaaactatg 36745970  T
Q  122 g 122  Q
    |    
T  36745971 g 36745971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 8761098 - 8761197
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||| | ||||||| |||| |  ||||||||||| |||| ||||||||||||||||||    
T  8761098 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacctattgacccagtacccccgccgagtcgatgaccgatccgagttttaaaactatg 8761197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 23015132 - 23015033
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||| ||||||| |||||||||||  ||| || ||||||| ||| |  |||||||||||| |||| |||| |||||||||||||    
T  23015132 tcagtcatgcggttcaaccaatgacccaatggttcgaccaatgactcagtgacccagtactttgaccgagtcgatgtccgatccgatttttaaaactatg 23015033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 32383892 - 32383991
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||| |||| ||||||||| | |||  ||| | ||||||| || | ||| |||||||||| |||||||||||||||||||||||    
T  32383892 tcagtcatgcggttcaaccaatgacacagtggttcaatcattaacctagtgacccagtatccctatcgagtcgatgaccgagccgagttttaaaactatg 32383991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 17421376 - 17421303
Alignment:
Q  48 cagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| ||  ||| |||||| |||||||| ||  |||||||||| |||||||||||||||||||||||    
T  17421376 cagtggttcgatcaatgactcaatgatccaatacccctctcgagtcgatgaccgagccgagttttaaaactatg 17421303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 27194786 - 27194875
Alignment:
Q  32 ggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||| |||| |||| ||||||||| || || |||||| | ||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  27194786 ggttcgaccaatgacacagtggttcaactattgacccattaacccagtaccccagccgagtcgatgaccgagccgagttttaaaactatg 27194875  T

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Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 14635444 - 14635344
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| || |||||||||||| |||||| ||||||| |||| |  ||||||||||| ||||||||| | | |||||||||    
T  14635444 tcagtcatgcggttcgaccaatgactcactggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgattctgaaaactatg 14635345  T
Q  122 g 122  Q
    |    
T  14635344 g 14635344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 814795 - 814878
Alignment:
Q  40 cagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||| |||||||||||||||| |||||| ||| ||| || |  ||||||||||||  |||| | ||||||||||||||||||    
T  814795 cagtgatccagtggttcgaccattgacccagtgatccagtatccttaccgagtcgatcaccgatctgagttttaaaactatggt 814878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 29823327 - 29823257
Alignment:
Q  51 tggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||| |||| | ||||||| |||| |  ||||||||||| ||||||||| |||||||||||||    
T  29823327 tggttcgaccattgacctagtgacccagtacccccgccgagtcgatgaccgagccgaattttaaaactatg 29823257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 3752553 - 3752452
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| || || ||||||||| |||||| ||||||| |||| |  ||||||||||| ||||||||| | | |||||||||    
T  3752553 tcagtcatgcggttcgaccaatgactcactgcttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgattctgaaaactatg 3752454  T
Q  122 gt 123  Q
    ||    
T  3752453 gt 3752452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 38892693 - 38892756
Alignment:
Q  33 gttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgat 96  Q
    |||| ||||||||||||||| |||||| || |||||| ||||||| ||||  ||||||||||||    
T  38892693 gttcgaccagtgacccagtgattcgactattgacccagtgacccagtacccttaccgagtcgat 38892756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 389700 - 389757
Alignment:
Q  64 gacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| ||||| | |||| || |||| |||||| |||||||||||||||||||||||    
T  389700 gacccagtgacctagtacccctgccgaatcgatgaccgagccgagttttaaaactatg 389757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 64444 - 64345
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||||||||||| |||||||||||||||| || ||||||| ||||| |  |||||||||| |||||||||||||||||||||||    
T  64444 tcagtcatgcggttcaaccagtgacccaatggttcgaccatcgactcagtgacccagtacctatgtcgagtcgatgaccgagccgagttttaaaactatg 64345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 41726362 - 41726464
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| ||||||  ||||||||||| |||||||||||||||||||||||    
T  41726362 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacctccgccgagtcgatgaccgagccgagttttaaaactatg 41726461  T
Q  122 gtc 124  Q
    |||    
T  41726462 gtc 41726464  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 36833977 - 36833904
Alignment:
Q  48 cagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||||| |||||||||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  36833977 cagtggttcgaccattgacccaatgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 36833904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 19726717 - 19726816
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  19726717 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 19726816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 32493189 - 32493288
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||| ||| ||||||||||||||||  || || ||||||||||||  | ||||||||||| |||||||||||||||||||||||    
T  32493189 tcagtcatgcggttcaaccaatgatccagtggttcgaccattaactcactgacccaatacccatgccgagtcgatgaccgagccgagttttaaaactatg 32493288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 42063561 - 42063462
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  42063561 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 42063462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 28761685 - 28761775
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagtttt 112  Q
    |||| ||| |||||||||||||||| ||||||||||||||| |||||||| ||||| |||| || ||||||||||| ||||||||| ||||    
T  28761685 tcagtcatgcggttcaaccagtgactcagtggttcgaccattgacccaataacccagtacccctgccgagtcgatgaccgagccgaatttt 28761775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 30360554 - 30360455
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| | || |||| ||||||||||||||| |||||| ||||||| ||||||  |||| |||||| |||||||||||||||||||||||    
T  30360554 tcagtcatgcggttcgaacaatgactcagtggttcgaccattgacccattgacccagtacctccgccgaatcgatgaccgagccgagttttaaaactatg 30360455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 40485557 - 40485656
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||| ||| |||||||||||||||||||||||    
T  40485557 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcaatgaccgagccgagttttaaaactatg 40485656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 26403637 - 26403727
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||||||||||||| ||||||||| |||||  || ||||||| || |||| ||| |||||||||| || ||||||||||||||| ||||    
T  26403637 cggttcaaccagtgactcagtggttcaaccattaactcaatgacacagtacccctatcgagtcgatgaccaagccgagttttaaaattatg 26403727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 44056506 - 44056604
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactat 120  Q
    |||| |||||||||| |||| |||| ||||||||||||||| |||||| |||  || |||| || |||||||||||  ||||| |||||||||||||||    
T  44056506 tcagtcatacggttcgaccaatgactcagtggttcgaccattgacccagtgattcagtacccctgccgagtcgatgatcgagctgagttttaaaactat 44056604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 14910185 - 14910095
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||| |||| ||||||||||| ||| |||||| ||| ||| |||  |  ||||||||||| |||||||||||||||||||||||    
T  14910185 cggttcgaccaatgactcagtggttcgatcattgacccattgatccagtactcccgccgagtcgatgaccgagccgagttttaaaactatg 14910095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 4455400 - 4455452
Alignment:
Q  71 tgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    ||||||| |||| || ||||||||||||||||||| |||||||||||||||||    
T  4455400 tgacccagtacccctgccgagtcgatggccgagccaagttttaaaactatggt 4455452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 20821809 - 20821901
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||||||  ||||| |||||||||||||||  ||||| |||| || || |  | |||||||||||||| |||| |||||||||||||||||    
T  20821809 cggttcaacaggtgactcagtggttcgaccattaacccagtgactcagtatccttgccgagtcgatggccaagccaagttttaaaactatggt 20821901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 29867827 - 29867728
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaat-acctctaccgagtcgatggccgagccgagttttaaaactat 120  Q
    |||| ||| |||||||||||||||| || |||||| ||||  |||||||||||||| | ||||| |||| ||| ||| ||| ||||||||||||||||||    
T  29867827 tcagtcatgcggttcaaccagtgactcactggttcaaccaatgacccaatgacccagtaacctc-accgtgtcaatgtccgggccgagttttaaaactat 29867729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 31008548 - 31008640
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatggt 123  Q
    |||||| |||| |||| || |||||||||||| |||||| |||| || |||| |  ||||||||||| |||| |||| |||||||||||||||    
T  31008548 cggttcgaccaatgactcactggttcgaccattgacccattgactcagtacccccgccgagtcgatgaccgaaccgaattttaaaactatggt 31008640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 597312 - 597234
Alignment:
Q  43 tgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| |||||||||||||||  || |||||| ||| | || |||||||||||||| | ||||||| |||||||||||||    
T  597312 tgactcagtggttcgaccattaactcaatgatccagtgcccctaccgagtcgatgactgagccgaattttaaaactatg 597234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 3655947 - 3655857
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||| |||| ||||||||||||||| || ||| ||| ||| || | |  ||||||||||| ||||||||| |||||||||||||    
T  3655947 cggttcgaccaatgactcagtggttcgaccattgatccattgatccagtatccccgccgagtcgatgaccgagccgaattttaaaactatg 3655857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 8014934 - 8015024
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||| |||| || |||||||||||| || ||| ||||| | |||| |  ||||||| ||| |||||||||||||||||||||||    
T  8014934 cggttcgaccaatgactcactggttcgaccattgatccagtgacctagtacccccgccgagtcaatgaccgagccgagttttaaaactatg 8015024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 11031120 - 11031030
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||| ||||||   ||||||||||| |||||| ||||||| || | | ||||||| |||| |||  ||||||||||||||||||    
T  11031120 cggttcaaccaatgacccgacggttcgaccattgacccagtgacccagtatccccaccgagttgatgaccggtccgagttttaaaactatg 11031030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 18656677 - 18656727
Alignment:
Q  71 tgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||| |||| || ||||||||||| |||||||||||||||||||||||    
T  18656677 tgacccagtacccctgccgagtcgatgaccgagccgagttttaaaactatg 18656727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 27845932 - 27846026
Alignment:
Q  27 catacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||||||| ||||| |||||| ||||  ||| || | ||||| || ||  |||||||| ||| |||| ||||||||||||||||||    
T  27845932 catacggttcaaccagtaacccaatggttcaaccaatgactcagtaacccagtaacttcaccgagtcaatgaccgatccgagttttaaaactatg 27846026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 36658565 - 36658515
Alignment:
Q  71 tgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||| |||| | |||||||||||| |||||||||||||||||||||||    
T  36658565 tgacccagtacccccaccgagtcgatgaccgagccgagttttaaaactatg 36658515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 13487154 - 13487253
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| || ||| ||| ||| |||| |  |||| |||||| ||||||||| |||||||||||||    
T  13487154 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgatccattgatccagtaccccg-ccgattcgatgaccgagccgaattttaaaactatg 13487252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 7938 - 7839
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||||||||  ||| |||||||||||||||  |||||||||| || ||||| | ||||||||||| |||||||||||||||||||||||    
T  7938 tcagtcatgcggttcaaccaacgactcagtggttcgaccattaacccaatgactcagtacctttgccgagtcgatgaccgagccgagttttaaaactatg 7839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 11046 - 11136
Alignment:
Q  31 cggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  11046 cggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 11136  T

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Target: scaffold0070 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 12820 - 12721
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| |||||| |||| |||| ||||||||||||||| |||||| ||||||| |||| |  ||||||||||| ||||| |||||||||||||||||    
T  12820 tcagtcatgcggttcgaccaatgactcagtggttcgaccattgacccattgacccagtacccccgccgagtcgatgaccgagtcgagttttaaaactatg 12721  T

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Target: scaffold0712 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 4948 - 5030
Alignment:
Q  38 accagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||| ||| |||||||||||||||  ||| | |||||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  4948 accagcgactcagtggttcgaccattaaccgagtgacccaacacc-ctaccgagtcgatgaccgagccgagttttaaaactatg 5030  T

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Target: scaffold0709 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 4968 - 5050
Alignment:
Q  38 accagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||| ||| |||||||||||||||  ||| | |||||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  4968 accagcgactcagtggttcgaccattaaccgagtgacccaacacc-ctaccgagtcgatgaccgagccgagttttaaaactatg 5050  T

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Target: scaffold0242 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 17856 - 17955
Alignment:
Q  22 tcagccatacggttcaaccagtgacccagtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    |||| ||| ||||||||||| |||| || ||||||||||||  |||||||||| || |||| || ||||||  |||| ||||| ||||||||||||||||    
T  17856 tcagtcatgcggttcaaccaatgactcaatggttcgaccattaacccaatgactcagtacccctgccgagtgaatggtcgagctgagttttaaaactatg 17955  T

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Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 51980 - 51909
Alignment:
Q  50 gtggttcgaccatcgacccaatgacccaatacctctaccgagtcgatggccgagccgagttttaaaactatg 121  Q
    ||||||||||||| ||| || ||||||| |||| |  ||||||||||| |||||||||||||||||||||||    
T  51980 gtggttcgaccattgactcattgacccagtacccccgccgagtcgatgaccgagccgagttttaaaactatg 51909  T

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