View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_low_14 (Length: 306)
Name: NF7315_low_14
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 43321685 - 43321409
Alignment:
| Q |
17 |
tatgatcagaggcaggacaaagacattaaaattgaactcaacaaatggagagattccaactcattacaatnnnnnnnnnnnnnnnn---ggcataatttt |
113 |
Q |
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| T |
43321685 |
tatgatcagaggcaggacacagacattaaaattgaactcaacaaatggagagattccaactcattagaataaaaaaataaaaaaaaacaggcataatttt |
43321586 |
T |
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| Q |
114 |
ccaatccatcctttgttataagcaaaaatataactgcccattggaacctttatcataatagttttgtttttggtacaagtatcataatagttttccatat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43321585 |
ccaatccatcctttgttataagcaaaaatataactgcccattggaacctttatcataatagttttgtttttggtacaagtatcataatagttttccatat |
43321486 |
T |
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| Q |
214 |
catatgttcgttaaaatagaatacaacaatctgacactcacatactcgtcagactgctaaaaaacacttctagatat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43321485 |
catatgttcgttaaaatagaatacaacaatctgacactcacatactcgtcagactgctaataaacacttctagatat |
43321409 |
T |
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