View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_low_17 (Length: 250)
Name: NF7315_low_17
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 48209700 - 48209947
Alignment:
| Q |
1 |
ctgaaacttaattacgtaaccattagctagctagatcaaagctctccttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttct |
100 |
Q |
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| T |
48209700 |
ctgaaacttaattacgtaaccattagctagctagatcaaagctcttcttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttct |
48209799 |
T |
|
| Q |
101 |
tttcattcctctgatacttctcaataaattgaagataattcctcctatcaataataatcctgttcatcttatcactgagacaagttccagaatcggttcc |
200 |
Q |
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| T |
48209800 |
tttcattcctctgatacttctcaataaattgaagataattcctcctatcaataataatcctgttcatcttatcactgagacaagttccagaatcggttcc |
48209899 |
T |
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| Q |
201 |
tgttttaaatataacaataaaaggatatcaattagaagcaaaaataaa |
248 |
Q |
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| T |
48209900 |
tgttttaaatataacaataaaaggatatcaattagaaacaaaaataaa |
48209947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 48217870 - 48217788
Alignment:
| Q |
108 |
cctctgatacttctcaataaattgaagataattcctcctatcaataataatcctgttcatcttatcactgagacaagttccag |
190 |
Q |
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| T |
48217870 |
cctctgatatttcttgatgaagtgaagataattcctcctaacaacaatagtcctattcatcttagcactgtgacaagttccag |
48217788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 32586813 - 32586881
Alignment:
| Q |
108 |
cctctgatacttctcaataaattgaagataattcctcctatcaataataatcctgttcatcttatcact |
176 |
Q |
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| T |
32586813 |
cctctgatacttcttaataaagtgaagataattcctcctgacaataatagtcctattcattttagcact |
32586881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 32586647 - 32586710
Alignment:
| Q |
43 |
tctccttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcat |
106 |
Q |
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||||||||||| |||| ||||||||||||||||||||| | ||||||| ||||| |||| |||| |
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| T |
32586647 |
tctccttccttgacacggaagcaaggtgatacatgagctggaatgtttgaatgcctcttctcat |
32586710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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