View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_low_18 (Length: 246)
Name: NF7315_low_18
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5477108 - 5477336
Alignment:
| Q |
1 |
ttagtttagttggttttgttgtgctattattctgggaggcaggtctgaatctgttggctttagtattgatgattgtttcacataatatcaaatgaatgtt |
100 |
Q |
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| T |
5477108 |
ttagtttagtttgttttgttgtgctattattctgggaggcaggtctgaatctgttggctttagtattgataattgtttcacataatatcaaatgaatgtt |
5477207 |
T |
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| Q |
101 |
agttctcatgtgtgcttcctgattcatgtttcataataattacctttcagtatgtatataaatatggtttagcgttttttcaggaagttgttaggattta |
200 |
Q |
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| T |
5477208 |
agttctcatgtgtgcttcctgattcatgcttcataataattacctttcagtatgtatataaatatggtttagcgttttttcaggaagttgttaggattta |
5477307 |
T |
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| Q |
201 |
taatgaatatcaactactgttattagatc |
229 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
5477308 |
taatgaatgtcaactactgttattagatc |
5477336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 41686455 - 41686353
Alignment:
| Q |
38 |
ggcaggtctgaatctgttggctttagtattgatgattgtttcacataatatcaaatgaatgttagttctcatgtgtgcttcctgattcatgtttcataat |
137 |
Q |
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|||||||||||||||| ||||||||||||||| || |||| |||||| ||| ||||| || | |||||||||||||||||| ||||||| |||||||| |
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| T |
41686455 |
ggcaggtctgaatctgctggctttagtattgaagaaagtttaacataacatcgaatgattgctcgttctcatgtgtgcttcccaattcatgcttcataat |
41686356 |
T |
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| Q |
138 |
aat |
140 |
Q |
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||| |
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| T |
41686355 |
aat |
41686353 |
T |
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