View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_low_2 (Length: 675)
Name: NF7315_low_2
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 121 - 497
Target Start/End: Original strand, 48207951 - 48208328
Alignment:
| Q |
121 |
ttttgacacacatgttgaacctcgtagaattttccaaaaaataatttatagacacgctcaatttt-ttatactcaattttgaattcttaattttaaccac |
219 |
Q |
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| T |
48207951 |
ttttgacacacatgttgaacctcgtagaatttttcaaaaaataatttatagacacactcaatttttttatactcaattttgaattcttaattttaaccac |
48208050 |
T |
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| Q |
220 |
tatatcttactcaatgtttcatcttactactttaaatttatttttgttcatgtcaaattgatcctaatcaatataattttcaacgtctctattgcatttt |
319 |
Q |
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| T |
48208051 |
tatatcttactcaatgtttcatcttactactttaaatttatttttgttcatgtcaaattgatccttatcaatataattttcaacgtctctattgcatttt |
48208150 |
T |
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| Q |
320 |
atgattgtcaacatcctaattctctaaattttctatttttgtcaccaccaacaaacccgaatgtgtttatggtgccaccagccaactctatggtgtagag |
419 |
Q |
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| T |
48208151 |
atgattgtcaacatcctaattctctaaattttctatttttgtcaccaccaacaaacccaaacgtgtttatggtgccaccagccaactctatggtgtagag |
48208250 |
T |
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| Q |
420 |
tttactcggtatgaacacaaaccaccaaagtatatattataatgttgagttccacaattttcaactcaattttctctt |
497 |
Q |
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| T |
48208251 |
tttactcggtatgaacacaaaccaccaaagtatatattataaagtcgagttccacaattttcaactcaattttatctt |
48208328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 47656493 - 47656579
Alignment:
| Q |
3 |
agacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacaggtgtattgaaagcttgttcgtgtcggttcgtgc |
89 |
Q |
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| T |
47656493 |
agacggtgcttgcggcttttatgaaggtgctggtcaagagacgtgtaagcacagatgtgttgaaagcttgttcgtgtgggttcgtgc |
47656579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 558 - 616
Target Start/End: Original strand, 48208390 - 48208448
Alignment:
| Q |
558 |
ccggagagctattcacaatggataaggctcaaaatgttgaataaatagcatacttagca |
616 |
Q |
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| T |
48208390 |
ccggagagctattcacaatggataaggctcagaatgttgaataaatagcatacttagca |
48208448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 54922940 - 54923016
Alignment:
| Q |
1 |
gaagacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacaggtgtattgaaagcttgttcgtg |
78 |
Q |
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| T |
54922940 |
gaagacggtgcttgcgtcttttatgacggtgctagccaagagacgtgtacgcacagatgtgttg-aagcttgttcgtg |
54923016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 618 - 657
Target Start/End: Original strand, 48209438 - 48209477
Alignment:
| Q |
618 |
ttagcatgctataagttactaactgaattattggtataag |
657 |
Q |
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| T |
48209438 |
ttagcatgctataagttactatctgaattattggtataag |
48209477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 11441904 - 11441783
Alignment:
| Q |
3 |
agacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacaggtgtattgaaagcttgttcgtgtcggttcgtgcggnnnnnnnatcg |
102 |
Q |
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| T |
11441904 |
agacggtgcttgcggcttttatgaaggtgctggccaagagacgtgtaaacacagatgtgttgaaagcttgttcgtgtgggttcgtgcggtttttttatcg |
11441805 |
T |
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| Q |
103 |
tgtgatatagcaacgctctttt |
124 |
Q |
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| T |
11441804 |
tgcgatatagcaacgctctttt |
11441783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 19731724 - 19731683
Alignment:
| Q |
248 |
actttaaatttatttttgttcatgtcaaattgatcctaatca |
289 |
Q |
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| T |
19731724 |
acttcaaatttatttttgtttatgtcaaatggatcctaatca |
19731683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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