View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_low_22 (Length: 227)
Name: NF7315_low_22
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 1253608 - 1253418
Alignment:
| Q |
25 |
gaatgaaaataaataagaggactattgatatatgaaatagagtgtgcatatgaaattaaacttcaatggtttaaagggtgacaatgacaaagttcgacat |
124 |
Q |
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| T |
1253608 |
gaatgaaaataaataagaggactattgatatatgaaatagagtgtgcatatgaaattaaacttcaatggtttaaagggtgacaatgacaaagttcgacat |
1253509 |
T |
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| Q |
125 |
tctaattatgagctggttatagccggccat--atatgagtcattttggaactta-ttttttctatgatatacttttgtttaa-tacaatat |
211 |
Q |
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| T |
1253508 |
tctaattatgagctggttatagccggccatatatatgagtcattttggaacttatttttttctatgatatacttttgtttaagtacaatat |
1253418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 1245155 - 1245026
Alignment:
| Q |
21 |
gatggaatgaaaataaataagaggactattgatatat----gaaatagagtgtgcatatgaaatta--aacttcaatggtttaaagggtgacaatgacaa |
114 |
Q |
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| T |
1245155 |
gatggaatgataataaagagaaggactattgagatatatgtgaaataaaatgtgcattggaaattacaaacttcaatgggttaaaacgtgacaatgacaa |
1245056 |
T |
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| Q |
115 |
agttcgacattctaattatgagctggttat |
144 |
Q |
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| T |
1245055 |
agttctacatgcaaataatgagctggttat |
1245026 |
T |
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