View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_low_5 (Length: 548)
Name: NF7315_low_5
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 7654426 - 7654775
Alignment:
| Q |
19 |
aacctatacagtctcacacagtgaccgtttccttggccgtttattttggtatttaaacactaaacaaagctcttatagtttccccttaatttcaaccaaa |
118 |
Q |
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| T |
7654426 |
aacctatacagtctcacacagtgaccgtttccttggccgtttattttggtatttaaacactaaacaaagctcttatagtgtccccttaatttcaaccaaa |
7654525 |
T |
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| Q |
119 |
ttatacagaaaagaaatataatcaagaaacacataaataagaatctgatcttctcttttgatctgtttctataggttctgattcttgagataattaataa |
218 |
Q |
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| T |
7654526 |
ttata---aaaagaaatataatcaagaaacacataaataagaatctgatcttctctttttatctgtttctataagtttcgattcttgaactaattaataa |
7654622 |
T |
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| Q |
219 |
taataatggcaatccatagaattgcaattggatctcctggagaggctggtcaacctgatgcaattagagctgcattcgctgaatttttctccatgcttat |
318 |
Q |
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| T |
7654623 |
taataatggcaatccatagaattgcaattggatctcctggagaggctggtcaacctgatgcaattagagctgcatttgctgaatttttctccatgcttat |
7654722 |
T |
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| Q |
319 |
ttttgtttttgctggtcaaggatctggcatggcttacagtgagagctctacat |
371 |
Q |
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| T |
7654723 |
ttttgtttttgctggtcaaggatctggcatggcttacagtgagagctctacat |
7654775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 369 - 542
Target Start/End: Original strand, 7654820 - 7654993
Alignment:
| Q |
369 |
cattctatttacgtttttaataaaagattgactcgatgtacatttaggtagaatcgacatttcagattgtaggcgatttcgagtgtctaacatgtgttgg |
468 |
Q |
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| T |
7654820 |
cattctatttacgtttttaataaaagattgacttgatgtacatttaggtagaatcgacatttcagattgtaggcgatttcgagtgtctaacatgtgttgg |
7654919 |
T |
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| Q |
469 |
tgttcgaagctcacatatgtgtttatattgaatcactttcattctcaaattattaccggtgtctatgtcattgt |
542 |
Q |
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| T |
7654920 |
tgtttgaagctcacatatgtgtttatattgaatcactttcattctcaaattattaccggtgtctatgtcattgt |
7654993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 222 - 361
Target Start/End: Complemental strand, 52103645 - 52103506
Alignment:
| Q |
222 |
taatggcaatccatagaattgcaattggatctcctggagaggctggtcaacctgatgcaattagagctgcattcgctgaatttttctccatgcttatttt |
321 |
Q |
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| T |
52103645 |
taatggcaatctacagaatagcaattgggtctcctagagaggctagcaatcctgctgcaattagagcagcctttgcagagttcttctctatgctcatttt |
52103546 |
T |
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| Q |
322 |
tgtttttgctggtcaaggatctggcatggcttacagtgag |
361 |
Q |
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| T |
52103545 |
tgtttttgctggccaaggctctggcatggcctatagtgag |
52103506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 40494259 - 40494314
Alignment:
| Q |
485 |
atgtgtttatattgaatcactttcatt--ctcaaattattaccggtgtctatgtca |
538 |
Q |
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| T |
40494259 |
atgtgattaaattcaatcactttcatttgcttaaattattaccggtgtctatgtca |
40494314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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