View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_low_7 (Length: 409)
Name: NF7315_low_7
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 29060291 - 29060684
Alignment:
| Q |
1 |
tgcaattaattatgtgttcatttcgtgttccttgtttggaattatttcatcaaaagtcaaaacaatgcatgccatatctagccatgttacttttcaaaat |
100 |
Q |
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| T |
29060291 |
tgcaattaattatgtgttcatttcgtgttccttgtttggaattatttcatcaaaagtcaaaacaatgcatgccatatatagccatgttacttttcaaaat |
29060390 |
T |
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| Q |
101 |
gtgaatttcaatccattgtattcctatttgcatttcaattcattcttagccacaaatacgtttcagg-caattcaaatatttatgaaaattgaaattcaa |
199 |
Q |
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| T |
29060391 |
gtgaatttcaatccattgtatccctatttgcatttcaattcattcttagccacaaatacgtttcagggcaattcaaatatttatgaaaattgaaattcaa |
29060490 |
T |
|
| Q |
200 |
ggtaatggcagggaaaactataatttgccaaagcatacatggaatgtgtaatgataggaaacaattctaaagaaaatcgagatcgtttccttttaatgta |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29060491 |
ggtaatggcagggaaaactataatttgccaaagcatacatggaatgtgtaatgataggaaacaattctaaagaaaatcgagatcgtttcattttaatgta |
29060590 |
T |
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| Q |
300 |
tccatgtttcaatttacaattcatgaagttgagaaaatactttctgtttttgtgtgttatcaacatatgaaacttttctattatgtagatgtcc |
393 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29060591 |
cccctgtttcaatttacaattcatgaagttgagaaaatactttctgtttttgtgtgttatcaacatatgaaacttttctattatgtatatgtcc |
29060684 |
T |
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