View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7315_low_9 (Length: 361)
Name: NF7315_low_9
Description: NF7315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7315_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 53695412 - 53695088
Alignment:
| Q |
15 |
aacctgtgcatatgattagttctgagaaatgtttaggtctttaggacactgccaaacatgtaatgccatccatgatttctttctccaacaaatatctgaa |
114 |
Q |
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| T |
53695412 |
aacctgtgcatatgattagttctgagaaatgtttaggtctttaggacactcccaaacatgtaatgccatccatgatttctttctccaacaaatatctgaa |
53695313 |
T |
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| Q |
115 |
aagaagaattcaataatatagttagattttgtgatccaaagaaaatacaaaacattgaaacaaacaaaagcagagaaacctaaatccatagaaaccctta |
214 |
Q |
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| T |
53695312 |
aagaacaattcaataatatagttagattttgtgatccaaagaaaatacaaaacattgaaacaaacaaaagcagagaaacctaaatccatagaaaccc-ta |
53695214 |
T |
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| Q |
215 |
aaacatgtcaacataattaaaggaatgtgattaaagcaaagataactccaaaaacgaaatttaagtggcatgcaaaggaatgttacaatgactcaccaaa |
314 |
Q |
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| T |
53695213 |
aaacatgtctacataattaaaggaatgtgattaaagcaaagataactccaaaaacgaaatttaagtggcatgcaaaggaatgttacaatgactcaccaaa |
53695114 |
T |
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| Q |
315 |
attggagatgaagttttatggagaag |
340 |
Q |
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| T |
53695113 |
attggagatgaagttttatggagaag |
53695088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 54 - 340
Target Start/End: Complemental strand, 53686062 - 53685773
Alignment:
| Q |
54 |
tttaggacactgccaaacatgtaatgccatccatgatttctttctccaacaaatatctgaaaagaagaattcaataatatagttagattttgtgatccaa |
153 |
Q |
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| T |
53686062 |
tttaggacactcccaaatctgtcatgacatccatgatttct--ctcaaacaaatatctgaaaagaacaattcaatgatatagttagattttgtgatccaa |
53685965 |
T |
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| Q |
154 |
agaaaatacaaaacattgaaacaaacaaaagcagagaaacctaaatccat----agaaacccttaaaacatgtcaacataattaaaggaatgtgattaaa |
249 |
Q |
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| T |
53685964 |
agagag-acaaaacattgaaacaaccaaaagcagataaacctaaatctatctatagaaaccct-aaaacatgtctacataatcaaaggaatgtgattaaa |
53685867 |
T |
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| Q |
250 |
gcaaagataactccaaaaacgaaatttaagtggcatgcaaaggaatgttacaatgact---caccaaaattggagatgaagttttatggagaag |
340 |
Q |
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| T |
53685866 |
acaaagataactccaaaatcgaaatttgagcggcatgcaaaggaatattacactgactcaccaccaaaattgaatatgaagttttatggagaag |
53685773 |
T |
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