View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7316_high_14 (Length: 272)

Name: NF7316_high_14
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7316_high_14
NF7316_high_14
[»] chr5 (9 HSPs)
chr5 (67-254)||(2707418-2707602)
chr5 (59-215)||(34064796-34064950)
chr5 (59-155)||(14395343-14395439)
chr5 (59-130)||(34064095-34064166)
chr5 (92-170)||(13208700-13208779)
chr5 (71-121)||(23206689-23206739)
chr5 (93-130)||(23206292-23206329)
chr5 (59-103)||(3969336-3969380)
chr5 (92-156)||(14394680-14394744)
[»] chr3 (8 HSPs)
chr3 (125-255)||(29535553-29535681)
chr3 (59-135)||(54316604-54316680)
chr3 (92-156)||(42153169-42153234)
chr3 (94-155)||(54515787-54515848)
chr3 (92-155)||(7723994-7724057)
chr3 (59-104)||(24163708-24163753)
chr3 (78-139)||(39793377-39793438)
chr3 (59-111)||(6105796-6105848)
[»] chr4 (12 HSPs)
chr4 (59-225)||(53522827-53522992)
chr4 (59-215)||(56459669-56459823)
chr4 (59-252)||(30938723-30938894)
chr4 (67-170)||(52206403-52206507)
chr4 (59-130)||(56458971-56459042)
chr4 (62-155)||(44348838-44348931)
chr4 (99-161)||(30765431-30765493)
chr4 (64-144)||(52207228-52207308)
chr4 (59-155)||(44818628-44818724)
chr4 (59-137)||(25092834-25092912)
chr4 (94-144)||(50464293-50464343)
chr4 (59-104)||(50463229-50463274)
[»] chr8 (8 HSPs)
chr8 (67-221)||(5664190-5664340)
chr8 (59-221)||(29703399-29703559)
chr8 (63-111)||(31042728-31042776)
chr8 (78-144)||(42104414-42104480)
chr8 (64-155)||(527681-527772)
chr8 (97-170)||(8742050-8742124)
chr8 (59-144)||(42104510-42104595)
chr8 (59-103)||(35044436-35044480)
[»] chr1 (9 HSPs)
chr1 (55-215)||(19402316-19402474)
chr1 (59-130)||(19403101-19403172)
chr1 (65-215)||(50803957-50804107)
chr1 (59-155)||(1169160-1169256)
chr1 (65-155)||(48578408-48578498)
chr1 (59-104)||(13258945-13258990)
chr1 (59-104)||(29117469-29117514)
chr1 (59-111)||(1170113-1170165)
chr1 (1-53)||(11344849-11344901)
[»] chr7 (5 HSPs)
chr7 (63-170)||(23365293-23365401)
chr7 (66-143)||(3233391-3233468)
chr7 (1-52)||(21305566-21305617)
chr7 (92-136)||(7562044-7562088)
chr7 (59-103)||(37034800-37034844)
[»] scaffold0728 (1 HSPs)
scaffold0728 (71-130)||(114-173)
[»] chr2 (4 HSPs)
chr2 (64-155)||(3130176-3130267)
chr2 (59-224)||(37569918-37570080)
chr2 (59-103)||(41432839-41432883)
chr2 (93-144)||(44040027-44040078)
[»] chr6 (1 HSPs)
chr6 (59-156)||(29299028-29299125)
[»] scaffold0197 (1 HSPs)
scaffold0197 (1-52)||(21987-22038)
[»] scaffold0085 (1 HSPs)
scaffold0085 (92-170)||(39096-39174)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 67 - 254
Target Start/End: Original strand, 2707418 - 2707602
Alignment:
Q  67 gacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaaggctcacatgt 166  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2707418 gacatatctagtgagaatgggttaattatatgagaatggtgagaac-cttatcaacctttagataaaaaataaatggtccagattaaaaggctcacatgt 2707516  T
Q  167 gtcttaacacctattctatctattctcatcaacacattcattttttcatcttccccaattttcttatgtccaaccaccgtcgtttatg 254  Q
    ||||||  |||||||||||| ||||||||||||| || ||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  2707517 gtctta--acctattctatcaattctcatcaacatatccatttgttcatcttccccaattttcttacgtccagccaccgtcgtttatg 2707602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 34064950 - 34064796
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagatt-aaaagg 157  Q
    ||||||||||  |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||      
T  34064950 atatagaggatgtatctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaaaaaaa 34064851  T
Q  158 ctcacatgtgtcttaacacctattctatctattctcatcaacacattcattttttcat 215  Q
    || ||||||||||   |||||||||||||  ||||||||||  ||||| ||| |||||    
T  34064850 cttacatgtgtct---cacctattctatcatttctcatcaattcattcctttgttcat 34064796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 14395439 - 14395343
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaa 155  Q
    ||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||    
T  14395439 atatagagggcatatctaatgagaatgagttatttatgtgagaatggtgagaacacttatcaacctttggataaaaaatgaatggaccagattaaaa 14395343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 34064095 - 34064166
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagat 130  Q
    ||||||||||  |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34064095 atatagaggatgtatctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagat 34064166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 13208700 - 13208779
Alignment:
Q  92 ttatatgagaatggtgagaacacttatcaacctttagat-caaaaataaatggtccagattaaaaggctcacatgtgtct 170  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||  ||||||||||||    
T  13208700 ttatgtgagaatggtgagaacacttatcaacctttagataaaaaaatgaatggaccagattaaaagcttcacatgtgtct 13208779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 23206739 - 23206689
Alignment:
Q  71 tatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaa 121  Q
    |||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  23206739 tatctaatgagaatgacttaattatatgagaatggtgagaacatttatcaa 23206689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 23206292 - 23206329
Alignment:
Q  93 tatatgagaatggtgagaacacttatcaacctttagat 130  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23206292 tatatgagaatggtgagaacacttatcaacctttagat 23206329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 3969380 - 3969336
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaat 103  Q
    ||||||||||||||||||||||||||| |||  |||| |||||||    
T  3969380 atatagaggacatatctagtgagaatgggtttgttatgtgagaat 3969336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 14394680 - 14394744
Alignment:
Q  92 ttatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaag 156  Q
    ||||||||||||||||| || | ||||||| | |||||| ||||||| |||||  ||||||||||    
T  14394680 ttatatgagaatggtgataataattatcaatcattagataaaaaatagatggttgagattaaaag 14394744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 125 - 255
Target Start/End: Original strand, 29535553 - 29535681
Alignment:
Q  125 ttagatcaaaaataaatggtccagattaaaaggctcacatgtgtcttaacacctattctatctattctcatcaacacattcattttttcatcttccccaa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||  |||||||||||||    
T  29535553 ttagatcaaaaataaatggtccagattaaaaggctcacatgtgtcttaac--ctattctatcaattctcatcaacacattcatttgatcatcttccccaa 29535650  T
Q  225 ttttcttatgtccaaccaccgtcgtttatgt 255  Q
    ||| |||||||||| ||||||| ||||||||    
T  29535651 tttgcttatgtccagccaccgtagtttatgt 29535681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 54316680 - 54316604
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaa 135  Q
    |||||| |||||| | |||||||||||| |||||||| |||||||||||||||||||| |||| |||||||| ||||    
T  54316680 atataggggacatgtttagtgagaatgacttaattatgtgagaatggtgagaacacttgtcaaactttagattaaaa 54316604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 42153169 - 42153234
Alignment:
Q  92 ttatatgagaatggtgagaacacttatcaacc-tttagatcaaaaataaatggtccagattaaaag 156  Q
    |||| |||||||||||||||||||||||| || ||||||| |||||| ||||| ||||||||||||    
T  42153169 ttatgtgagaatggtgagaacacttatcagccttttagataaaaaatgaatggaccagattaaaag 42153234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 54515787 - 54515848
Alignment:
Q  94 atatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaa 155  Q
    ||||||||||| |||||| |||| | ||||||||||||||| ||||||| | ||||||||||    
T  54515787 atatgagaatgatgagaatacttgtgaacctttagatcaaatataaatgattcagattaaaa 54515848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 7723994 - 7724057
Alignment:
Q  92 ttatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaa 155  Q
    ||||||||||||||||||||   | ||||||| ||||||||| ||||||||||  |||||||||    
T  7723994 ttatatgagaatggtgagaatgatcatcaaccattagatcaataataaatggttgagattaaaa 7724057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 24163753 - 24163708
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatg 104  Q
    |||||||| ||||||||||||||||||||||  |||| ||||||||    
T  24163753 atatagagaacatatctagtgagaatgagtttgttatgtgagaatg 24163708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 39793438 - 39793377
Alignment:
Q  78 tgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataa 139  Q
    |||||||||||| ||||  | ||||||| ||||||||| |||||| ||||||| ||||||||    
T  39793438 tgagaatgagttgattacgttagaatggcgagaacactcatcaacatttagataaaaaataa 39793377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 6105796 - 6105848
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaa 111  Q
    ||||| |||||||||||  ||||||||  ||| ||||||||||||||||||||    
T  6105796 atatataggacatatcttatgagaatgcattatttatatgagaatggtgagaa 6105848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 53522827 - 53522992
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacc-tttagatcaaaaataaatggtccagattaaaagg 157  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||| || |    
T  53522827 atatataggacatatctagtgagaatgggttaattatatgagaatggtgagaacacttatcaaccttttaggtcagaaataaatggttcagattagaatg 53522926  T
Q  158 ctcacatgtgtcttaacacctattctatctattctcatcaacacattcattttttcatcttccccaat 225  Q
    |||||||||||||||  | ||||| |||| ||||||| |||| |||| |||| |||||||||||||||    
T  53522927 ctcacatgtgtctta--atctattgtatcaattctcaacaactcattaatttgttcatcttccccaat 53522992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 56459823 - 56459669
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagatta-aaagg 157  Q
    ||||||||||  | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||      
T  56459823 atatagaggatgtttctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagattacaaaaa 56459724  T
Q  158 ctcacatgtgtcttaacacctattctatctattctcatcaacacattcattttttcat 215  Q
    || ||||||||||   |||||||||||||  ||||||||||  ||||| ||| |||||    
T  56459723 cttacatgtgtct---cacctattctatcatttctcatcaattcattcctttgttcat 56459669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 252
Target Start/End: Complemental strand, 30938894 - 30938723
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaaggc 158  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||                    |||||||||||||    
T  30938894 atatatagggcatatctagtgagaatgagttaattatatgagaatagtaagaacacttatcaacctt--------------------cagattaaaaggc 30938815  T
Q  159 tcacatgtgtcttaacacctattctatctattctcatcaacacattcattttttcatcttccccaattttcttatgtccaaccaccgtcgttta 252  Q
    ||||||||||||||||  |||||||||| |||||||||||  ||||||||| |||||||||||||||||||| || |||| || ||||||||||    
T  30938814 tcacatgtgtcttaac--ctattctatcaattctcatcaattcattcatttgttcatcttccccaattttctcatttccagccgccgtcgttta 30938723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 52206403 - 52206507
Alignment:
Q  67 gacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagatt-aaaaggctcacatg 165  Q
    |||||||||||||||||||  ||| |||||||||||||||||||| |||| |||||| || ||||||||||||||||| |||||| ||||| ||||||||    
T  52206403 gacatatctagtgagaatggcttagttatatgagaatggtgagaatacttctcaacccttggatcaaaaataaatggttcagattaaaaagactcacatg 52206502  T
Q  166 tgtct 170  Q
    |||||    
T  52206503 tgtct 52206507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 56458971 - 56459042
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagat 130  Q
    ||||||||||  |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  56458971 atatagaggatgtatctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagat 56459042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 44348931 - 44348838
Alignment:
Q  62 tagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaa 155  Q
    |||||||||||||||||||||||| || | ||||||||||||||||| || |||| |||||| |||||||||||||  |||||  |||||||||    
T  44348931 tagaggacatatctagtgagaatgggtaagttatatgagaatggtgaaaatacttctcaacccttagatcaaaaattgatggttgagattaaaa 44348838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 30765493 - 30765431
Alignment:
Q  99 agaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaaggctca 161  Q
    ||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||    
T  30765493 agaatggtgagaatacttatcaacctttagatcaaaaacaagtggtccagattaaaagcctca 30765431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 52207308 - 52207228
Alignment:
Q  64 gaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggt 144  Q
    ||||||||||||||||||||||  ||| ||| |||| |||||| |||| |||| |||||| || |||||||||||||||||    
T  52207308 gaggacatatctagtgagaatggcttagttacatgacaatggttagaatacttctcaacccttggatcaaaaataaatggt 52207228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 44818724 - 44818628
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaa 155  Q
    ||||| |||||||||||||||||||||  ||  |||| |||||||| |||||| |  ||  |||| |||||||||||||||||| |  |||||||||    
T  44818724 atatataggacatatctagtgagaatgtcttctttatgtgagaatgatgagaatatctaataaccattagatcaaaaataaatgcttgagattaaaa 44818628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 25092912 - 25092834
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaat 137  Q
    ||||||||||||||||   |||||||||||   |||||||||||| |||||||   |||| |||| |||||||||||||    
T  25092912 atatagaggacatatcatatgagaatgagtattttatatgagaatagtgagaatgattattaaccattagatcaaaaat 25092834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 50464343 - 50464293
Alignment:
Q  94 atatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggt 144  Q
    |||||||||||||||||| | ||||||||| |||||| | |||||||||||    
T  50464343 atatgagaatggtgagaataattatcaaccattagattacaaataaatggt 50464293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 50463229 - 50463274
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatg 104  Q
    ||||| |||||||||||||||||||| | ||| |||||||||||||    
T  50463229 atatataggacatatctagtgagaatcacttatttatatgagaatg 50463274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 5664340 - 5664190
Alignment:
Q  67 gacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccaga-ttaaaaggctcacatg 165  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || ||||||| ||||||||    
T  5664340 gacatatctagtgagaatgggttaattatatgagaatggtgagaacacttatcaacctttagatgaaaaataaatggttcggatttaaaagtctcacatg 5664241  T
Q  166 tgtcttaacacctattctatctattctcatcaacacattcattttttcatcttccc 221  Q
    ||||||||||  ||||||||  ||||   ||||| ||||||||| |||||||||||    
T  5664240 tgtcttaaca--tattctattaattc---tcaactcattcatttgttcatcttccc 5664190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 29703559 - 29703399
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaaggc 158  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||       
T  29703559 atatagagaccatatctagtgagaatgagttaattatgtgagaatggtgagaacacttatcaacctttagatcaaaaattaatggtctaaattaaaaact 29703460  T
Q  159 tcacatgtgtcttaacacctattctatctattctcatcaacacattcattttttcatcttccc 221  Q
    |||||||||||| |   ||||||||||| |||||||| ||| ||||  ||| ||||| |||||    
T  29703459 tcacatgtgtctca--tcctattctatcaattctcattaactcatttctttgttcattttccc 29703399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 31042728 - 31042776
Alignment:
Q  63 agaggacatatctagtgagaatgagttaattatatgagaatggtgagaa 111  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  31042728 agaggacatatctagtgagaatgacttagttatatgagaatggtgagaa 31042776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 42104414 - 42104480
Alignment:
Q  78 tgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggt 144  Q
    |||||||||||   ||||||||||||| ||||||   ||||||||| ||||||||||||||||||||    
T  42104414 tgagaatgagtactttatatgagaatgatgagaatgattatcaaccattagatcaaaaataaatggt 42104480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 527772 - 527681
Alignment:
Q  64 gaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaa 155  Q
    ||||||||||||||||||||||  ||  |||| |||||||| |||||| |  ||  |||| |||||||||||||||||| |  |||||||||    
T  527772 gaggacatatctagtgagaatgtcttctttatgtgagaatgatgagaatatctaataaccattagatcaaaaataaatgattgagattaaaa 527681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 8742050 - 8742124
Alignment:
Q  97 tgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtcc-agattaaaaggctcacatgtgtct 170  Q
    |||||||||||||||  |||||||||  | |||||||||||||||||||| | ||||||||  ||| ||||||||    
T  8742050 tgagaatggtgagaatgcttatcaacaataagatcaaaaataaatggtcctacattaaaagcttcatatgtgtct 8742124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 42104595 - 42104510
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggt 144  Q
    ||||| |||||||||   |||||||||| |   ||||||||||||| ||||||   ||||||||  ||||||||||||||||||||    
T  42104595 atatataggacatatactgtgagaatgactactttatatgagaatgatgagaatgattatcaactattagatcaaaaataaatggt 42104510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 35044480 - 35044436
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaat 103  Q
    |||||||||||||||||||||||||||| ||  |||| |||||||    
T  35044480 atatagaggacatatctagtgagaatgacttctttatgtgagaat 35044436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 19402316 - 19402474
Alignment:
Q  55 atacatatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagatta-a 153  Q
    ||||||||||||||  | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  19402316 atacatatagaggatgtttctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagattaca 19402415  T
Q  154 aaggctcacatgtgtcttaacacctattctatctattctcatcaacacattcattttttcat 215  Q
    ||  || ||||||||||   |||||||||||||  ||||||||||  ||||| ||| |||||    
T  19402416 aaaacttacatgtgtct---cacctattctatcatttctcatcaattcattcctttgttcat 19402474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 19403172 - 19403101
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagat 130  Q
    ||||||||||  |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19403172 atatagaggatgtatctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagat 19403101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 50804107 - 50803957
Alignment:
Q  65 aggacatatctagtga-gaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtcc-agattaaaaggctcac 162  Q
    ||||||||||| |||| ||||| |||||||||||||||||| ||||||  |||||||||| |  ||||||||||||||| ||| | |||||||   |||     
T  50804107 aggacatatcttgtgaagaatgggttaattatatgagaatgatgagaatgcttatcaaccatatgatcaaaaataaatgatcctacattaaaatcttcat 50804008  T
Q  163 atgtgtcttaacacctattctatctattctcatcaacacattcattttttcat 215  Q
    |||||||| |   ||||||||||| |||||||| |||  |||||||| |||||    
T  50804007 atgtgtctca--ccctattctatccattctcataaactaattcatttgttcat 50803957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 1169160 - 1169256
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaa 155  Q
    |||||||||||||||||||||||||||  ||  |||| |||||||| |||||| |  ||  |||| |||||||||||||||||| |  |||||||||    
T  1169160 atatagaggacatatctagtgagaatgtcttctttatgtgagaatgatgagaatatctaataaccattagatcaaaaataaatgattgagattaaaa 1169256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 48578408 - 48578498
Alignment:
Q  65 aggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaa 155  Q
    |||||||||||||||||||||  ||  |||||||||||||||||||| || | | || | |||||| |||||| ||||||  |||||||||    
T  48578408 aggacatatctagtgagaatgccttctttatatgagaatggtgagaatacatgttaatcattagattaaaaatgaatggttgagattaaaa 48578498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 13258945 - 13258990
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatg 104  Q
    |||||||||||||||||| ||||||||| ||  |||||||||||||    
T  13258945 atatagaggacatatctaatgagaatgacttctttatatgagaatg 13258990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 29117514 - 29117469
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatg 104  Q
    |||||||||||||||||||||||||||| ||  |||| ||||||||    
T  29117514 atatagaggacatatctagtgagaatgatttctttatgtgagaatg 29117469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 1170165 - 1170113
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaa 111  Q
    |||||||||||||||||||||||||||  ||  |||| |||||||| ||||||    
T  1170165 atatagaggacatatctagtgagaatgtcttctttatgtgagaatgatgagaa 1170113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11344901 - 11344849
Alignment:
Q  1 tctagtttgttacactttttaaataatacaagcaaaacaaaaagctaaacata 53  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||| || |||||    
T  11344901 tctagtttgttacactttttaaatgataaaagaaaaaaaaaaagttacacata 11344849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 23365401 - 23365293
Alignment:
Q  63 agaggacatatctagtgagaatgagttaa-ttatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaaggc-tc 160  Q
    |||||||||||||||||||||| || ||| |||| ||||||| ||||||||||||| |||||||||||| |||||| ||||  ||||||||||| || ||    
T  23365401 agaggacatatctagtgagaat-agataacttatgtgagaattgtgagaacacttaccaacctttagataaaaaatgaatgaaccagattaaaaagcttc 23365303  T
Q  161 acatgtgtct 170  Q
    ||||||||||    
T  23365302 acatgtgtct 23365293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 3233468 - 3233391
Alignment:
Q  66 ggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatgg 143  Q
    ||||||||||||||| ||||  ||  |||||||||||||||||||| |||| | |||| ||||||| |||||||||||    
T  3233468 ggacatatctagtgaaaatgtcttctttatatgagaatggtgagaatacttcttaaccattagatctaaaataaatgg 3233391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21305566 - 21305617
Alignment:
Q  1 tctagtttgttacactttttaaataatacaagcaaaacaaaaagctaaacat 52  Q
    |||||||||||||||||||||||| ||| || |||||||||||| |||||||    
T  21305566 tctagtttgttacactttttaaatgataaaaacaaaacaaaaagttaaacat 21305617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 7562088 - 7562044
Alignment:
Q  92 ttatatgagaatggtgagaacacttatcaacctttagatcaaaaa 136  Q
    ||||||||||||| |||||| | |||| |||||||||||||||||    
T  7562088 ttatatgagaatgatgagaataattatgaacctttagatcaaaaa 7562044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 37034800 - 37034844
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaat 103  Q
    |||||||| ||||||||||||||||||||||  |||| |||||||    
T  37034800 atatagagaacatatctagtgagaatgagtttcttatgtgagaat 37034844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0728 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 173 - 114
Alignment:
Q  71 tatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagat 130  Q
    |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  173 tatctaatgagaataacttaattatatgagaatggtgagaacacttatcaacctttagat 114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 3130267 - 3130176
Alignment:
Q  64 gaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaa 155  Q
    |||||||||| || ||||||||||| | |||||| ||||||||||||| |||| |||||| |||||||||||||||||| |  |||||||||    
T  3130267 gaggacatatgtattgagaatgagtaagttatataagaatggtgagaatacttctcaacccttagatcaaaaataaatgattaagattaaaa 3130176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 37570080 - 37569918
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaaggc 158  Q
    ||||| |||||||||||  ||||||||| ||   ||| |||||||||||||||    | || ||| |||||| | ||||||||||| |||||||||| ||    
T  37570080 atatataggacatatctcatgagaatgaattttatatgtgagaatggtgagaatgaatgtccaccattagattacaaataaatggttcagattaaaaagc 37569981  T
Q  159 tcacatgtgtcttaacacctattctatctattctcatcaacacattcattttttcatcttccccaa 224  Q
    ||||||| || |||||   ||||| ||| |||||||| ||| ||||||||| ||||||||||||||    
T  37569980 tcacatg-gttttaact--tattccatcaattctcattaactcattcatttgttcatcttccccaa 37569918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 41432883 - 41432839
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaat 103  Q
    |||||||||||||||||||||||||||||||  |||| |||||||    
T  41432883 atatagaggacatatctagtgagaatgagtttgttatgtgagaat 41432839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 44040078 - 44040027
Alignment:
Q  93 tatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggt 144  Q
    ||||||||||||||||||| |||| |||||| || ||||||||| |||||||    
T  44040078 tatatgagaatggtgagaatacttctcaacccttggatcaaaaacaaatggt 44040027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 29299028 - 29299125
Alignment:
Q  59 atatagaggacatatctagtgagaatgagttaattatatgagaatggtgagaaca-cttatcaacctttagatcaaaaataaatggtccagattaaaag 156  Q
    ||||| |||||||||||||||||||||||||  |||| |||||||  |||||| |  ||||||||| |||||||||||||| ||| | |||||||||||    
T  29299028 atatataggacatatctagtgagaatgagtttgttatgtgagaat-atgagaatagtttatcaaccattagatcaaaaatatatgattcagattaaaag 29299125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22038 - 21987
Alignment:
Q  1 tctagtttgttacactttttaaataatacaagcaaaacaaaaagctaaacat 52  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||| |||||||    
T  22038 tctagtttgttacactttttaaatgataaaagtaaaacaaaaagttaaacat 21987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 39096 - 39174
Alignment:
Q  92 ttatatgagaatggtgagaacacttatcaacctttagatcaaaaataaatggtccagattaaaaggctcacatgtgtct 170  Q
    |||| |||||| | ||||||||||| |||  |||||||| |||||| ||||| |||||||||||   ||||||||||||    
T  39096 ttatgtgagaacgatgagaacacttgtcagtctttagataaaaaatgaatggaccagattaaaaacttcacatgtgtct 39174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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