View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7316_high_16 (Length: 236)
Name: NF7316_high_16
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 48467873 - 48467667
Alignment:
| Q |
14 |
tgagatgaatccaaagatatcagattttggtatggctaaactttttgagaagtatgaacttgaagcgaatacaagcaggatcgtgggaacgtagtaagta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48467873 |
tgagatgaatccaaagatatcagattttggtatggctaaactttttgagaagtatgaacttgaagcgaatacaagcaggatcgtgggaacgtagtaagta |
48467774 |
T |
|
| Q |
114 |
aattttaatcaataatgcgttatcgttgttccttggatgactctaaccacgtgtattgccttttatagtgggtacgtgcctcccgagtatgtcagaaaag |
213 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48467773 |
aattttaatcaataatgcgttattgttgttccttggatgactctaaccacgtgtattgccttttatagtgggtacgtgcctcccgagtatgtcagaaaag |
48467674 |
T |
|
| Q |
214 |
gcatata |
220 |
Q |
| |
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||||||| |
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| T |
48467673 |
gcatata |
48467667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 48869535 - 48869733
Alignment:
| Q |
14 |
tgagatgaatccaaagatatcagattttggtatggctaaactttttgagaagtatgaacttgaagcgaatacaagcaggatcgtgggaacgtagtaagta |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||| |
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| T |
48869535 |
tgagatgaatccaaagatatcagattttagtatggctaaactttttgagaagtatgaacttgaagcaaatacaagcaggattgtgggtgcttagtaagta |
48869634 |
T |
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| Q |
114 |
aattttaatcaataatgcgttatcgttgttccttggatgactctaaccacgtgtattgccttttatagtgggtacgtgcctcccgagtatgtcagaaaag |
213 |
Q |
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| T |
48869635 |
aattttaatcaatga--------cgttgttccttggatgactctaaccacatgtattgccttttgtagtgggtatgtgcctcccgattatgtcagaaaag |
48869726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 48885221 - 48885419
Alignment:
| Q |
14 |
tgagatgaatccaaagatatcagattttggtatggctaaactttttgagaagtatgaacttgaagcgaatacaagcaggatcgtgggaacgtagtaagta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||| |
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| T |
48885221 |
tgagatgaatccaaagatatcagattttagtatggctaaactttttgagaagtatgaacttgaagcaaatacaagcaggattgtgggtgcttagtaagta |
48885320 |
T |
|
| Q |
114 |
aattttaatcaataatgcgttatcgttgttccttggatgactctaaccacgtgtattgccttttatagtgggtacgtgcctcccgagtatgtcagaaaag |
213 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
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| T |
48885321 |
aattttaatcaatga--------cgttgttccttggatgactctaaccacatgtattgccttttgtagtgggtatgtgcctcccgattatgtcagaaaag |
48885412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 48476739 - 48476529
Alignment:
| Q |
14 |
tgagatgaatccaaagatatcagattttggtatggctaaactttttgagaagtatgaacttgaagcgaatacaagcaggatcgtgggaacgtagtaagta |
113 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| | |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
48476739 |
tgagatgaatcctaagatttcagattttggtatggctagaatttttggaaagtatgaacttgaagcaaacacaagcaggatcgtgggaacgtagtaagtt |
48476640 |
T |
|
| Q |
114 |
aattttaatcaataatgcgttatc----gttgttccttggatgactctaaccacgtgtattgccttttatagtgggtacgtgcctcccgagtatgtcaga |
209 |
Q |
| |
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||| |||| |||| || ||||| ||||||| | ||| |||||| ||| |||| | ||||| ||||||||| || |||||||||||||||||| |
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| T |
48476639 |
aatcataattaatagtgtattatctttgtttgttccctcaatgtctctaatcacttgtaacggcttttgtagtgggtatgtacctcccgagtatgtcaga |
48476540 |
T |
|
| Q |
210 |
aaaggcatata |
220 |
Q |
| |
|
||||||||||| |
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|
| T |
48476539 |
aaaggcatata |
48476529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 48484054 - 48483841
Alignment:
| Q |
14 |
tgagatgaatccaaagatatcagattttggtatggctaaactttttgagaagtatgaacttgaagcgaatacaagcaggatcgtgggaacgtagtaagta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||| || ||||||||||| || ||||| ||||||||| |
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|
| T |
48484054 |
tgagatgaatccaaagatatcagattttggtatggctagaattttcgggaagtatgaacttgaagcaaacacaagcaggatagtaggaacatagtaagta |
48483955 |
T |
|
| Q |
114 |
aattttaatcaataatgcgttatcgttgttccttggatgactctaaccacgtgtat-tgcct------tttatagtgggtacgtgcctcccgagtatgtc |
206 |
Q |
| |
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||| |||||| ||||| |||||| ||||||| | |||| |||||| ||| || || |||| ||| ||||||||| || ||||| ||||||||| |
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| T |
48483954 |
aatcataatcagtaatgtgttatctttgttccctcgatgtctctaatcacttgaatcggcctttgtactttgtagtgggtatgtacctccggagtatgtc |
48483855 |
T |
|
| Q |
207 |
agaaaaggcatata |
220 |
Q |
| |
|
| |||||||||||| |
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| T |
48483854 |
aaaaaaggcatata |
48483841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 38820012 - 38820215
Alignment:
| Q |
17 |
gatgaatccaaagatatcagattttggtatggctaaactttttgagaagtatgaacttgaagcgaatacaagcaggatcgtgggaacgtagtaagtaaat |
116 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38820012 |
gatgaatccaaagatattagatttcggtatggctaaactttttgagaagtatgaacttgaagtaaatacaagcaggatcgtgggaacgtagtaagtaaat |
38820111 |
T |
|
| Q |
117 |
tttaatcaataatgcgttatcgttgttccttggatgactctaaccacgtgtattgccttttatagtgggtacgtgcctcccgagtatgtcagaaaaggca |
216 |
Q |
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|||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38820112 |
tttaattaataatgtgttatcgttgctccttggatgactctaaccacgtgtattgccttttatagtgggtacgtgcctcccgagtatgtcagaaaaggca |
38820211 |
T |
|
| Q |
217 |
tata |
220 |
Q |
| |
|
|||| |
|
|
| T |
38820212 |
tata |
38820215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 2672523 - 2672566
Alignment:
| Q |
18 |
atgaatccaaagatatcagattttggtatggctaaactttttga |
61 |
Q |
| |
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||||||||||||||||||||||||||||| |||| | ||||||| |
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|
| T |
2672523 |
atgaatccaaagatatcagattttggtattgctagaatttttga |
2672566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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