View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7316_high_17 (Length: 235)
Name: NF7316_high_17
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 2226330 - 2226234
Alignment:
| Q |
128 |
atctatgatgaagaattgagtaaaaagattgannnnnnnnatcaagattcaaatttgggtgtattttattttgatattgcgttgttactgttgtttt |
224 |
Q |
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| T |
2226330 |
atctatgatgaagaattgagtaaaaagattgattttttttatcaagattcaaatttgggtgtattttattttgatattgcgttgttactgttgtttt |
2226234 |
T |
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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 36247186 - 36247242
Alignment:
| Q |
168 |
atcaagattcaaatttgggtgtattttattttgatattgcgttgttactgttgtttt |
224 |
Q |
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| T |
36247186 |
atcaagattcaaatttgggggtattttattttgatattgtgttgttactgttgtttt |
36247242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 19180754 - 19180698
Alignment:
| Q |
168 |
atcaagattcaaatttgggtgtattttattttgatattgcgttgttactgttgtttt |
224 |
Q |
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|||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
19180754 |
atcaagattcaaatttggatgtattttgttttgatattgtattgttactgttgtttt |
19180698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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