View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7316_high_18 (Length: 230)
Name: NF7316_high_18
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 32935723 - 32935512
Alignment:
| Q |
1 |
aacataatcaccgcaatatcatgtaaagcaatagtattttacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccct |
100 |
Q |
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| T |
32935723 |
aacataatcaccgcactatcatgtaaagcaatagtattttacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccct |
32935624 |
T |
|
| Q |
101 |
cctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcattcatcaaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32935623 |
cctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcattcattaaagt |
32935524 |
T |
|
| Q |
201 |
ttgagccagaag |
212 |
Q |
| |
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|||||||||||| |
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| T |
32935523 |
ttgagccagaag |
32935512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 32927436 - 32927250
Alignment:
| Q |
27 |
agcaatagtattttacatcttcagttaggtaagcgaaagctgaagtaacaaaaag-tttcttttgtccactccctcctccaccattccatattccactga |
125 |
Q |
| |
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||||||| | |||||||||||| |||| |||||| ||||| |||| ||||||||| ||| |||| ||| || |||||||||||||||||||| |||| | |
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| T |
32927436 |
agcaataatgttttacatcttcggttaagtaagcaaaagccgaagaaacaaaaagattttttttttccgcttcctcctccaccattccatatcccaccaa |
32927337 |
T |
|
| Q |
126 |
aagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcattcatcaaagtttgagccagaag |
212 |
Q |
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| T |
32927336 |
aagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatctctttgcattcatcaaagtttgagccagaag |
32927250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 32943114 - 32942994
Alignment:
| Q |
92 |
ccactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcatt |
191 |
Q |
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||||| ||||||||||| |||||||| |||| ||| | || || ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32943114 |
ccacttcctcctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatctctttgcatt |
32943015 |
T |
|
| Q |
192 |
catcaaagtttgagccagaag |
212 |
Q |
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|||||||||| |||||||||| |
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| T |
32943014 |
catcaaagttggagccagaag |
32942994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 32950244 - 32950175
Alignment:
| Q |
143 |
ggacatggatcattcactttaagaaccttaagaattatctctttgcattcatcaaagtttgagccagaag |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
32950244 |
ggacatggatcattcactttaagtgccttaagaattatctctttgcattcatcaaagttggggccagaag |
32950175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 191
Target Start/End: Complemental strand, 32924680 - 32924529
Alignment:
| Q |
40 |
tacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaa |
139 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||| | |||||||| | | |||||||| |||||||||||| |||| ||||||| ||||||||| || | |
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| T |
32924680 |
tacatcttcagctaggtaaaagaaagatgaagcagcaaaaagtattctctgtccacttcctcctccaccactccaaattccaccaaaagtgcaattctga |
32924581 |
T |
|
| Q |
140 |
tagggacatggatcattcactttaagaaccttaagaattatctctttgcatt |
191 |
Q |
| |
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||||||||||||| ||||| ||||||| ||| | ||| ||||| |||||||| |
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|
| T |
32924580 |
tagggacatggataattcaatttaagagcctcacgaactatctttttgcatt |
32924529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 32912707 - 32912557
Alignment:
| Q |
40 |
tacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaa |
139 |
Q |
| |
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||||||||||| ||||||| ||||| ||||| | ||||||| | || |||||| | || ||||| |||||||| ||||||| ||||||||| | | |
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| T |
32912707 |
tacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttga |
32912608 |
T |
|
| Q |
140 |
tagggacatggatcattcactttaagaaccttaagaattatctctttgcat |
190 |
Q |
| |
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||||||||||||| |||| |||||| ||||| ||||||||| ||||||| |
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| T |
32912607 |
tagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
32912557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 11824986 - 11824870
Alignment:
| Q |
75 |
caaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaag |
174 |
Q |
| |
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|||||||||| | |||||||| ||||||||||||||||| ||||||| ||||||||| || ||| |||||||||| ||||| ||||||| ||| | | |
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| T |
11824986 |
caaaaagttttctctgtccacttcctcctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaagagcctgatg |
11824887 |
T |
|
| Q |
175 |
aattatctctttgcatt |
191 |
Q |
| |
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|| ||||| |||||||| |
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|
| T |
11824886 |
aactatctttttgcatt |
11824870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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