View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7316_high_6 (Length: 424)
Name: NF7316_high_6
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 46796015 - 46795611
Alignment:
| Q |
1 |
tagttagtacgtggtacttagtggttagttagtctgatcttttcaaagatagagataggtatctcagataaatgattatatataagtctatgggactgta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46796015 |
tagttagtacgtggtacttagcggttagttagtctgatcttttcaaagatagagataggtatctcagataaatgattatatataagtctatgggactgta |
46795916 |
T |
|
| Q |
101 |
cttggaccgttaagtataggagcagagaagctaccactgtgttgaattgtgatcttttccacacaatacctagggttttcaaccattggttccaaatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795915 |
cttggaccgttaagtataggagcagagaagctaccactgtgttgaattgtgatcttttccacacaatacctagggttttcaaccattggttccaaatgtt |
46795816 |
T |
|
| Q |
201 |
ctctttccctaataatttcccttcttcatcatcttcttcttcttaccctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795815 |
ctctttccctaataatttcccttcttcatcatcttcttcttcttaccctaatagtaccctttcttttctcattgacaatcctgaaaataatgattttcca |
46795716 |
T |
|
| Q |
301 |
aataacaatactactcttcttgatgattcactactttctattcctttcactacatcaacacatcatgatgttgttccattccctgatgctaattttgcag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46795715 |
aataacaatactactcttcttgatgattcactactttctattcctttc---acatcaacacatcatgatgttgttccattccctgatactaattttgcag |
46795619 |
T |
|
| Q |
401 |
attgtaac |
408 |
Q |
| |
|
|||||||| |
|
|
| T |
46795618 |
attgtaac |
46795611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University