View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7316_low_1 (Length: 978)
Name: NF7316_low_1
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 37468523 - 37469040
Alignment:
| Q |
1 |
gaacgaagaataacgtggttgcgtcgagttattgggggatttcgaggccaaagattatgagagaggatggaacagagtggccttggaactgcttcatggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37468523 |
gaacgaagaataacgtggttgcgtcgagttattgggggatttcgaggccaaagattatgagagaggatggaactgagtggccttggaactgcttcatggt |
37468622 |
T |
|
| Q |
101 |
aacgattttctgaattgaagannnnnnnnn--gcattcgtttgttttttcgctaattcatgatttctataagtggaatttgacttatgagacgagatttc |
198 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37468623 |
aacgattttctgaattgaagatttttttttttgcattcgtttgttttt-cgctaattcatgatttctataagtggaatttgacttatgagacgagatt-c |
37468720 |
T |
|
| Q |
199 |
gttgttaattgtagccatgggagacttatcaatcaaacgtttccattgatctgaataagcatcatgtgccgaagaattttctggataaagtcgcttacag |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37468721 |
gttgttaattgtagccatgggagacttatcaatcaaacgtttccattgatctgaataagcatcatgtgccgaagaattttctggataaagtcgcttacag |
37468820 |
T |
|
| Q |
299 |
gacagtgaagcttctcagaattcccactgatgtgttttttaaggtgtgtgatatactatagcacttgattttgaaatttcctattgtatgatccataaca |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37468821 |
gacagtgaagcttctcagaattcccactgatgtgttttttaaggtgtgtgatatactatagcacttgattttgaaatttcctattgtatgatccataaca |
37468920 |
T |
|
| Q |
399 |
aaagaaaagagaagaaggaagtgttctctgtagcacaaacacttctgacggaaggtgtatggtgccttaaaccgacacatgtgattgcatacaattaatt |
498 |
Q |
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| T |
37468921 |
aaagaaaagagaagaaggaagtgttctatgtagcacaaacacttctgacggaaggtgtatggtgccttacactgacacatgtgattgcattcaattaatt |
37469020 |
T |
|
| Q |
499 |
tcatttagtcaaatttttac |
518 |
Q |
| |
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|||||||||||||||||||| |
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| T |
37469021 |
tcatttagtcaaatttttac |
37469040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 576 - 963
Target Start/End: Original strand, 37469089 - 37469476
Alignment:
| Q |
576 |
gtgcttcatacaaagtgtttgctatatatgaaagggtggtatatttatgtgctcttaagaaattgatttgtttagcgacatttactaatatattattann |
675 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
37469089 |
gtgcttcatacaaagtgtttgctatatatgaa-gggtggtatatttatgtgctcttaagaaattgatttgtttagcaacatgtactaatatattattatt |
37469187 |
T |
|
| Q |
676 |
nnnnnattcctggaaatatgcatcattgatattgcatgtcatgtatttgctctnnnnnnntat--agatacatactatactagacattgtaggttcatca |
773 |
Q |
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| T |
37469188 |
tttttattcctggaaatatgcatcgttgatattgcatgtcatgtatttgctctaaaaaaatatctagatacatactatactagacattgtaggttcatca |
37469287 |
T |
|
| Q |
774 |
caaaattttgttctgacgttcttcatggaaattgtctcaattgttattcataataatccatgaatattttcagagacgttatggttgccgtgcaatgatg |
873 |
Q |
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| T |
37469288 |
caaaattttgttctgacgt-cttcatggaaattgtctcaattgttattcataataatccatgaatattttcagagacgttatggttgccgtgcaatgatg |
37469386 |
T |
|
| Q |
874 |
cttgaaacagttgcagctgtccctggaatggttggagggatgctgttgcacctcaagtcactccgaaaatttcagcatagtggtggttgg |
963 |
Q |
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| T |
37469387 |
cttgaaacagttgcagctgtccctggaatggttggagggatgctgttgcacctcaagtcactccgaaaatttcagcatagtggtggttgg |
37469476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 853 - 917
Target Start/End: Complemental strand, 29934764 - 29934700
Alignment:
| Q |
853 |
tatggttgccgtgcaatgatgcttgaaacagttgcagctgtccctggaatggttggagggatgct |
917 |
Q |
| |
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| T |
29934764 |
tatggttgccatgcaatgatgctagaaacaatagcagcggtccctggaatggtgggagggatgct |
29934700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 844 - 918
Target Start/End: Complemental strand, 10972464 - 10972390
Alignment:
| Q |
844 |
cagagacgttatggttgccgtgcaatgatgcttgaaacagttgcagctgtccctggaatggttggagggatgctg |
918 |
Q |
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| T |
10972464 |
cagagaaggtatggatgccgagcaatgatgcttgagacagtagctgctgtccctgggatggtaggaggaatgctg |
10972390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 859 - 963
Target Start/End: Complemental strand, 29932034 - 29931930
Alignment:
| Q |
859 |
tgccgtgcaatgatgcttgaaacagttgcagctgtccctggaatggttggagggatgctgttgcacctcaagtcactccgaaaatttcagcatagtggtg |
958 |
Q |
| |
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|||| |||||||||||| |||||| ||||||| ||||| |||||| ||||||||||| || ||| | ||||| || |||||||||| || | ||||| |
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| T |
29932034 |
tgccatgcaatgatgctggaaacaattgcagccgtcccgccaatggtgggagggatgcttttacacttgaagtctctaagaaaatttcaacacactggtg |
29931935 |
T |
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| Q |
959 |
gttgg |
963 |
Q |
| |
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||||| |
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| T |
29931934 |
gttgg |
29931930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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