View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7316_low_10 (Length: 420)
Name: NF7316_low_10
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 219 - 415
Target Start/End: Original strand, 3581468 - 3581665
Alignment:
| Q |
219 |
taaatccgttcatggtcactataattattaggcatgtatgtcaacctagttatctaattcataattttcacaaaaagagaccaagtgtgagtgaaagatc |
318 |
Q |
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| T |
3581468 |
taaatccgcccatggtcaccataatcattgggcatgtatgtcaacctagttatctaattcataattttcacaaaaagagaccaagtgtgagtgaaagatc |
3581567 |
T |
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| Q |
319 |
ggcatgcgtgctgatcatggatggatcacaggctagggtataac-aaaatnnnnnnntcaagaaagagaaatttgccggaaattctaatacatttttt |
415 |
Q |
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| T |
3581568 |
ggcatgcgtgctgatcatggatggatcacaggctagggtataacaaaaaaagtaaaatcaagaaagagtaatttgccggaaattctaatacatttttt |
3581665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 12248030 - 12248082
Alignment:
| Q |
16 |
attatttcctt-atagatatataaaactgattaaaacaaataatttaatcaaa |
67 |
Q |
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| T |
12248030 |
attatttcctttataaatatatgaaattgattaaaataaataatttaatcaaa |
12248082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 38340575 - 38340624
Alignment:
| Q |
18 |
tatttccttatagatatataaaactgattaaaacaaataatttaatcaaa |
67 |
Q |
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| T |
38340575 |
tatttccttataaatatataaaattgattaaaataaataatttaatcaaa |
38340624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 44618786 - 44618739
Alignment:
| Q |
16 |
attatttccttatagatatataaaactgattaaaacaaataatttaat |
63 |
Q |
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| T |
44618786 |
attatttccatataaatatataaatttgattaaaacaaataatttaat |
44618739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 13886846 - 13886800
Alignment:
| Q |
21 |
ttccttatagatatataaaactgattaaaacaaataatttaatcaaa |
67 |
Q |
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| T |
13886846 |
ttccttataaatatataaaattgattaaaataaataatttaatcaaa |
13886800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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