View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7316_low_11 (Length: 383)

Name: NF7316_low_11
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7316_low_11
NF7316_low_11
[»] chr2 (1 HSPs)
chr2 (18-383)||(34936657-34937022)


Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 34936657 - 34937022
Alignment:
Q  18 gaatctgccatcccttgtaacacttgtgcatgtggttgtcatgatacaaggaaatgtaatcctaatgcttcacctttacttcttccacctgatgcacttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34936657 gaatctgccatcccttgtaacacttgtgcatgtggttgtcatgatacaaggaaatgtaatcctaatgcttcacctttacttcttccacctgatgcacttc 34936756  T
Q  118 ttgtccctttcgtgaatagaaccgaaaaggcaaaggcttgggcaaaactcaaacatcgtcgtattccgactaagttaccttgtggagataattgtcctgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34936757 ttgtccctttcgtgaatagaaccgaaaaggcaaaggcttgggcaaaactcaaacatcgtcgtattccgactaagttaccttgtggagataattgtcctgt 34936856  T
Q  218 tagtattaactggcatgttagttcagatcacaaggaaggctggacagctaggattacacttttcaattgggaggattcctcttttgaagattggttcact 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34936857 tagtattaactggcatgttagttcagatcacaaggaaggctggacagctaggattacacttttcaattgggaggattcctcttttgaagattggttcact 34936956  T
Q  318 gcaatgaagttcgacaaggctttcgaagattttcaagatgtttattcatttaatggaacaagaatt 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34936957 gcaatgaagttcgacaaggctttcgaagattttcaagatgtttattcatttaatggaacaagaatt 34937022  T

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