View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7316_low_14 (Length: 309)

Name: NF7316_low_14
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7316_low_14
NF7316_low_14
[»] chr2 (1 HSPs)
chr2 (1-300)||(34937047-34937346)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 34937047 - 34937346
Alignment:
Q  1 caaggacttaaagatatgaattacttagcaggagaaactaatggaactcatgaatatgatccaagggtgccagggaaacaacagtctgtgattgcttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34937047 caaggacttaaagatatgaattacttagcaggagaaactaatggaactcatgaatatgatccaagggtgccagggaaacaacagtctgtgattgcttttc 34937146  T
Q  101 ataagaaacacactaaaaatttcaacgtcgagcgtgacgcttttccttctaaggtatacttcaatggaatggaatgttcaatgcctccacgtagacctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34937147 ataagaaacacactaaaaatttcaacgtcgagcgtgacgcttttccttctaaggtatacttcaatggaatggaatgttcaatgcctccacgtagacctac 34937246  T
Q  201 taaaagtgcaggacataaatcttctatcagcatcgttgcagtcgtcttcacagcttttatgacatttttgctcatgaccgatcgctttttctgagatatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34937247 taaaagtgcaggacataaatcttctatcagcatcgttgcagtcgtcttcacagcttttatgacatttttgctcatgactgatcgctttttctgagatatt 34937346  T

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