View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7316_low_3 (Length: 850)

Name: NF7316_low_3
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7316_low_3
NF7316_low_3
[»] chr5 (21 HSPs)
chr5 (1-834)||(37704626-37705459)
chr5 (5-193)||(37699152-37699349)
chr5 (587-789)||(37437914-37438116)
chr5 (5-133)||(37437696-37437823)
chr5 (680-787)||(37700646-37700753)
chr5 (19-77)||(37698806-37698864)
chr5 (319-461)||(34599459-34599603)
chr5 (313-461)||(2143247-2143394)
chr5 (341-564)||(13953394-13953616)
chr5 (491-568)||(1629760-1629837)
chr5 (469-585)||(1629683-1629799)
chr5 (469-585)||(29532047-29532161)
chr5 (313-416)||(26325678-26325781)
chr5 (471-512)||(2143379-2143420)
chr5 (479-564)||(30384213-30384297)
chr5 (316-364)||(38458771-38458819)
chr5 (479-566)||(37704830-37704917)
chr5 (470-533)||(41232901-41232964)
chr5 (251-293)||(30384256-30384298)
chr5 (334-394)||(29531914-29531975)
chr5 (469-565)||(38458805-38458899)
[»] chr2 (15 HSPs)
chr2 (328-564)||(4558769-4559007)
chr2 (332-583)||(8198509-8198759)
chr2 (332-583)||(8203269-8203519)
chr2 (500-583)||(45385838-45385921)
chr2 (469-583)||(4923428-4923542)
chr2 (604-671)||(8265959-8266027)
chr2 (469-564)||(42053964-42054059)
chr2 (328-409)||(6739472-6739554)
chr2 (475-564)||(3289442-3289531)
chr2 (313-373)||(42054042-42054102)
chr2 (515-581)||(4558680-4558745)
chr2 (341-394)||(4923553-4923607)
chr2 (506-564)||(8198419-8198477)
chr2 (506-564)||(8203179-8203237)
chr2 (510-585)||(32546464-32546538)
[»] chr6 (21 HSPs)
chr6 (328-570)||(16419591-16419837)
chr6 (329-456)||(196111-196238)
chr6 (472-583)||(12458392-12458504)
chr6 (426-564)||(33547750-33547889)
chr6 (313-461)||(17411121-17411270)
chr6 (331-455)||(28477384-28477509)
chr6 (331-455)||(29789836-29789961)
chr6 (313-502)||(7004200-7004390)
chr6 (253-295)||(17411089-17411131)
chr6 (469-565)||(10544282-10544376)
chr6 (347-443)||(32548138-32548235)
chr6 (477-533)||(7202300-7202356)
chr6 (334-417)||(33547849-33547933)
chr6 (356-461)||(7202313-7202419)
chr6 (336-409)||(10544136-10544210)
chr6 (355-455)||(29693282-29693383)
chr6 (469-566)||(31314513-31314609)
chr6 (252-295)||(196244-196287)
chr6 (344-438)||(9405267-9405362)
chr6 (491-564)||(196063-196135)
chr6 (469-510)||(33547744-33547785)
[»] chr4 (24 HSPs)
chr4 (5-193)||(16840857-16841060)
chr4 (606-779)||(16840622-16840796)
chr4 (313-444)||(22519386-22519518)
chr4 (313-564)||(31095124-31095377)
chr4 (469-583)||(22519807-22519921)
chr4 (475-564)||(48194394-48194483)
chr4 (313-443)||(49291205-49291335)
chr4 (491-583)||(33617920-33618010)
chr4 (328-564)||(20141745-20141983)
chr4 (476-564)||(22889586-22889674)
chr4 (476-564)||(22941250-22941338)
chr4 (253-293)||(31095092-31095132)
chr4 (489-564)||(53769786-53769861)
chr4 (479-585)||(2323266-2323372)
chr4 (496-570)||(42676809-42676883)
chr4 (313-378)||(51580077-51580140)
chr4 (479-562)||(34013780-34013861)
chr4 (484-559)||(22519373-22519448)
chr4 (470-565)||(34717567-34717660)
chr4 (469-520)||(40070309-40070360)
chr4 (479-533)||(31095078-31095131)
chr4 (328-370)||(53769786-53769828)
chr4 (469-510)||(22519313-22519354)
chr4 (472-533)||(48194179-48194239)
[»] chr7 (24 HSPs)
chr7 (313-583)||(41331168-41331439)
chr7 (328-583)||(18128375-18128632)
chr7 (472-565)||(30551947-30552040)
chr7 (472-565)||(6589558-6589651)
chr7 (489-568)||(12422044-12422123)
chr7 (478-585)||(32804629-32804736)
chr7 (476-564)||(1532197-1532285)
chr7 (387-575)||(20389633-20389822)
chr7 (469-564)||(28003341-28003434)
chr7 (328-414)||(48447315-48447402)
chr7 (471-564)||(5755594-5755685)
chr7 (328-417)||(12264801-12264890)
chr7 (328-407)||(12422262-12422342)
chr7 (481-585)||(12422352-12422455)
chr7 (385-585)||(21920965-21921164)
chr7 (328-379)||(28002279-28002330)
chr7 (485-550)||(32918529-32918595)
chr7 (472-533)||(1532441-1532501)
chr7 (489-565)||(6586862-6586938)
chr7 (334-374)||(32857850-32857890)
chr7 (636-671)||(21595127-21595162)
chr7 (484-563)||(48447283-48447362)
chr7 (252-290)||(12422352-12422390)
chr7 (470-527)||(5762696-5762753)
[»] scaffold0591 (1 HSPs)
scaffold0591 (447-585)||(3866-4003)
[»] chr8 (18 HSPs)
chr8 (478-564)||(2277209-2277295)
chr8 (485-565)||(27532989-27533069)
chr8 (469-548)||(37064689-37064768)
chr8 (481-583)||(15907689-15907790)
chr8 (469-583)||(15907944-15908058)
chr8 (313-565)||(2510015-2510263)
chr8 (501-583)||(12807666-12807748)
chr8 (313-443)||(3806871-3807000)
chr8 (253-298)||(18080600-18080645)
chr8 (472-568)||(32566875-32566969)
chr8 (478-566)||(2967707-2967794)
chr8 (469-564)||(3806998-3807091)
chr8 (328-460)||(12189869-12190002)
chr8 (328-460)||(12434297-12434430)
chr8 (478-548)||(45445141-45445210)
chr8 (495-587)||(41123-41216)
chr8 (314-378)||(8453098-8453163)
chr8 (491-536)||(32566724-32566769)
[»] chr1 (22 HSPs)
chr1 (328-564)||(363615-363853)
chr1 (328-563)||(47726457-47726693)
chr1 (328-563)||(47747763-47747999)
chr1 (472-565)||(16554303-16554396)
chr1 (329-459)||(29954870-29955000)
chr1 (475-564)||(18470189-18470279)
chr1 (469-564)||(802251-802346)
chr1 (476-583)||(12656368-12656474)
chr1 (478-564)||(16026108-16026194)
chr1 (389-585)||(11016877-11017075)
chr1 (328-394)||(26706207-26706274)
chr1 (469-564)||(46530163-46530258)
chr1 (476-533)||(48130213-48130268)
chr1 (481-570)||(48130428-48130516)
chr1 (484-583)||(363806-363906)
chr1 (469-548)||(26706353-26706432)
chr1 (481-583)||(46530411-46530517)
chr1 (605-671)||(2125101-2125168)
chr1 (328-374)||(18470384-18470430)
chr1 (472-533)||(16026346-16026406)
chr1 (476-533)||(18470439-18470495)
chr1 (313-461)||(47600499-47600648)
[»] chr3 (9 HSPs)
chr3 (325-560)||(30534432-30534666)
chr3 (328-564)||(51265744-51265984)
chr3 (376-533)||(44291025-44291182)
chr3 (469-565)||(44291413-44291509)
chr3 (479-583)||(48200367-48200471)
chr3 (472-533)||(51265679-51265739)
chr3 (252-295)||(44291420-44291463)
chr3 (328-394)||(50898882-50898948)
chr3 (482-583)||(1662257-1662357)


Alignment Details
Target: chr5 (Bit Score: 725; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 1 - 834
Target Start/End: Original strand, 37704626 - 37705459
Alignment:
Q  1 gaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704626 gaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatg 37704725  T
Q  101 tgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704726 tgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattac 37704825  T
Q  201 gatacttttaagttatttaattataacaaatcggnnnnnnnnnnnnnnnncgtatcacttacgtcatttaagttatttaattataacaagttagttatgt 300  Q
    || |||||||||||||||||||||||||||||||                |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37704826 gagacttttaagttatttaattataacaaatcggttttttaagattttttcgtatcacttgcgtcatttaagttatttaattataacaagttagttatgt 37704925  T
Q  301 agttgctcaaaaaacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagtt 400  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704926 agttgctcaaaaaacaagttagttatgtaagtatttttcgtaacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagtt 37705025  T
Q  401 ttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaact 500  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  37705026 ttaagatctgaaatccctcaatttgttacagttaaatagcttagaggacctaattggtacgaaaaaaattaaaggaccaacttgttataattaattaact 37705125  T
Q  501 taaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaacatttattttatgtac 600  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705126 taaaggacctaagtggtacgtaaaaatcttaaatgaccaatttcttacaactaaataacttaaaagacttatggtgtaatttaacatttattttatgtac 37705225  T
Q  601 gtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatat 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37705226 gtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataatttcttcaaagtttgttacagcacaaaagaaaatgcattgagcatat 37705325  T
Q  701 aaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggttcatcatggaccacatttctt 800  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705326 aaaaagaaaaagtatcagatgccatcggatatcgatactcaactcgtgggttctacggtagaccacctttataattggttcatcatggaccacatttctt 37705425  T
Q  801 atatttacgactaagtgggtgacttgattgatgt 834  Q
    ||||||||||||||||||||||||||||||||||    
T  37705426 atatttacgactaagtgggtgacttgattgatgt 37705459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 37699152 - 37699349
Alignment:
Q  5 agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataa---gataacaaattcatttaagtagcaatcacagtgagtaatgt 101  Q
    |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||| | |||||||| |    
T  37699152 agacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaattt 37699251  T
Q  102 gcttaaaaatacacctgaaatgaagaaaat------aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 193  Q
    |||||||||||||||| |||||||||||||      |||||||||||||||||| | ||||||||||||||||||||| || ||| ||||||||||||    
T  37699252 gcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagcaacggagacttagacttcttcaactgaacagactttaaagagc 37699349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 587 - 789
Target Start/End: Original strand, 37437914 - 37438116
Alignment:
Q  587 tttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaa 686  Q
    ||||||||||||   | |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||| || ||| |||||| |||||||    
T  37437914 tttattttatgtgttttttttttctatggttcttaactaaactacaaaaatttctttaaatttataatttcctcaaagcttattatagcacataagaaaa 37438013  T
Q  687 tgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggttcatcat 786  Q
    |||| |||||||||||||||||||||||| |  ||||||  |||||||||||||||||  |||||||||| ||| |||||||||||||  ||||||||||    
T  37438014 tgcactgagcatataaaaagaaaaagtattaagtgtcatatgatatcgatactctactattgagttctactgtaaaccacctttataagcggttcatcat 37438113  T
Q  787 gga 789  Q
    |||    
T  37438114 gga 37438116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 37437696 - 37437823
Alignment:
Q  5 agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataa---gataacaaattcatttaagtagcaatcacagtgagtaatgt 101  Q
    |||||||| ||||||||||||||    ||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||| | |||||||| |    
T  37437696 agacttttcgaacgtaattagca----agttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaattt 37437791  T
Q  102 gcttaaaaatacacctgaaatgaagaaaataa 133  Q
    ||||||||||||||||||||||||||||||||    
T  37437792 gcttaaaaatacacctgaaatgaagaaaataa 37437823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 680 - 787
Target Start/End: Original strand, 37700646 - 37700753
Alignment:
Q  680 aagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggt 779  Q
    ||||||||||| |||||| ||||||||||||  ||| |  ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  37700646 aagaaaatgcactgagcacataaaaagaaaacatattaagtgtcatcggatattgatactctactcgtgagttctaccgtagaccacttttataagtggt 37700745  T
Q  780 tcatcatg 787  Q
    ||||||||    
T  37700746 tcatcatg 37700753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 37698806 - 37698864
Alignment:
Q  19 taattagcacgaaagttggaatcttatttcaagttgtgataagataacaaattcattta 77  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37698806 taattagcactaaagttggaatcttattgcaagttgtgataagataacaaattcattta 37698864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 319 - 461
Target Start/End: Original strand, 34599459 - 34599603
Alignment:
Q  319 ttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat-cc 416  Q
    |||||||| |||||||||||| |||  |||| ||| |||||||| |||||||||||| ||||||||| ||||||||| || ||||||||||| |||| ||    
T  34599459 ttagttatttaagtatttttcttaatgcttaagtcctttaagttgtttaattgtaacttttaggtccagaataacttacatttttaagatctaaaatacc 34599558  T
Q  417 ctcaatttcttacagttaaatagcttagaggacctaattggtacg 461  Q
    |  || || |||| |||||||| |||| | ||||||||| |||||    
T  34599559 caaaaattgttacggttaaataacttaaatgacctaattagtacg 34599603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 313 - 461
Target Start/End: Complemental strand, 2143394 - 2143247
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctga 411  Q
    |||||||||||  | | |||||||||| ||||| ||||||  ||||||||||||||||| |||||| ||| |||||||||||| ||  |||||||| | |    
T  2143394 aacaagttagtcctttcagtatttttcgtaacatttaggttttttaagttatttaattgaaactttgaggccccgaataacttacatgtttaagatataa 2143295  T
Q  412 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 461  Q
    ||||||  || || ||  ||||||||| |||| ||||||||||| |||||    
T  2143294 aatcccctaaattgtt--agttaaataacttaaaggacctaattagtacg 2143247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 341 - 564
Target Start/End: Original strand, 13953394 - 13953616
Alignment:
Q  341 taacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatag 439  Q
    ||||| ||| ||| ||||| |||||||| |||||||||  | ||  ||||||||| || ||||| | |||||||||||| || || ||||  |||||||     
T  13953394 taacatttaagtcctttaaattatttaactgtaacttttagaccttgaataacttacatttttagg-tctgaaatcccttaaatttttacgattaaataa 13953492  T
Q  440 cttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatca 539  Q
    |||| | ||| |||||||||||       ||||| ||| ||||||||| |||||||||||||||| ||| |||| |||| | ||||||||||||  | ||    
T  13953493 cttaaaagacgtaattggtacggaaaaacttaaaagacaaacttgttacaattaattaacttaaatgacttaagcggtatg-aaaaaacttaaaaaacca 13953591  T
Q  540 atttcttacaactaaataacttaaa 564  Q
    |||| ||| || |||| ||||||||    
T  13953592 atttattataattaaacaacttaaa 13953616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 491 - 568
Target Start/End: Complemental strand, 1629837 - 1629760
Alignment:
Q  491 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 568  Q
    |||| ||||||||||||| ||| || |||| |||||||||||| |||| |||| |||||| ||| |||||||||||||    
T  1629837 ttaaataacttaaaggacttaattgctacggaaaaaacttaaaggatcgatttgttacaattaattaacttaaaagac 1629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 585
Target Start/End: Complemental strand, 1629799 - 1629683
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 568  Q
    |||||||| | | |||||| |||||||||||||||| ||||||| | ||||  ||||   |||||  |  ||||| |||||| ||||||||||||| |||    
T  1629799 ttaaaggatcgatttgttacaattaattaacttaaaagacctaatttgtacagaaaatttttaaagaacgaatttattacaattaaataacttaaaggac 1629700  T
Q  569 ttatggtgtaatttaac 585  Q
    || ||||||||||||||    
T  1629699 ttttggtgtaatttaac 1629683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 585
Target Start/End: Original strand, 29532047 - 29532161
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 568  Q
    ||||| ||||||||| ||| | ||||||||| ||||| | ||||||| |||| |||||| ||||| | ||||||| |||||| | |||||||| ||||||    
T  29532047 ttaaatgaccaactttttacagttaattaacataaagaagctaagtgatacg-aaaaaatttaaaggttcaatttgttacaattgaataactt-aaagac 29532144  T
Q  569 ttatggtgtaatttaac 585  Q
     |||| |||||||||||    
T  29532145 atatgatgtaatttaac 29532161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 313 - 416
Target Start/End: Original strand, 26325678 - 26325781
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 412  Q
    ||||||||||| || ||||||||| |  |||||||||  || ||||| |||||||||| ||||||||| ||| |||||||||  | |||||| || ||||    
T  26325678 aacaagttagtcatttaagtatttattgtaacacttaaatcctttaaattatttaattataactttagatcctgaataacttatatttttaatatttgaa 26325777  T
Q  413 atcc 416  Q
    ||||    
T  26325778 atcc 26325781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 512
Target Start/End: Original strand, 2143379 - 2143420
Alignment:
Q  471 aaaggaccaacttgttataattaattaacttaaaggacctaa 512  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  2143379 aaaggactaacttgttacaattaattaacttaaaggacctaa 2143420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 564
Target Start/End: Complemental strand, 30384297 - 30384213
Alignment:
Q  479 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||| |||||| ||||||||| ||| |||||  |||| |||||||||||| ||  ||||| |||||| |||||||||||||    
T  30384297 aacttgttacaattaaataacttaaaagacgtaagtaatacg-aaaaaacttaaaagacaaatttgttacaattaaataacttaaa 30384213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 38458819 - 38458771
Alignment:
Q  316 aagttagttatgtaagtatttttcataacacttaggtcgtttaagttat 364  Q
    |||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  38458819 aagttagtcatttaagtatttttcataacacttgggtcctttaagttat 38458771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 566
Target Start/End: Complemental strand, 37704917 - 37704830
Alignment:
Q  479 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 566  Q
    |||||||||||||||| ||||||||| |||  ||||| |||| ||||| ||||||  | | |||| ||| || |||||||||||||||    
T  37704917 aacttgttataattaaataacttaaatgacgcaagtgatacgaaaaaatcttaaaaaaccgatttgttataattaaataacttaaaag 37704830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 533
Target Start/End: Complemental strand, 41232964 - 41232901
Alignment:
Q  470 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 533  Q
    |||| ||||||||| ||| |||||||| |||||||||| ||||||||||   ||||||||||||    
T  41232964 taaaagaccaacttattacaattaattgacttaaaggatctaagtggtatcaaaaaaacttaaa 41232901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
Q  251 cgtatcacttacgtcatttaagttatttaattataacaagtta 293  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  30384256 cgtattacttacgtcttttaagttatttaattgtaacaagtta 30384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 29531914 - 29531975
Alignment:
Q  334 tttttcataacacttaggtcgtttaagttatttaattgtaa-ctttaggtcccgaataactt 394  Q
    |||||| || || ||| ||| ||||||||||||||||||||  |||||||||||||||||||    
T  29531914 tttttcgtatcatttacgtcatttaagttatttaattgtaatttttaggtcccgaataactt 29531975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 565
Target Start/End: Original strand, 38458805 - 38458899
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 565  Q
    ||||| ||| ||||| ||| ||| || ||||||||| ||  ||||||||||| ||||||||||||  |  ||||| |||||| ||||||||||||||    
T  38458805 ttaaatgactaacttattacaataaaataacttaaaagatataagtggtacgaaaaaaacttaaa--actaatttattacaattaaataacttaaaa 38458899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 5e-46; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 328 - 564
Target Start/End: Original strand, 4558769 - 4559007
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 426  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||| |  |||||||||||| ||||||||||| |||| |||||| |  |    
T  4558769 taagtatttttcgtaacacttaggtcttttaatttatttaattgtaacttttaggccatgaataacttgcatttttaagatctaaaatacctcaaatagt 4558868  T
Q  427 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggta-cgtaaa 524  Q
    ||| ||||||||||||| |||||||||||||||| |       |||||||| |||||||||| ||||||||||| ||||| |||||||| ||| |  |||    
T  4558869 tacggttaaatagcttaaaggacctaattggtacagacaaaacttaaaggaacaacttgttacaattaattaacataaagtacctaagttgtaccaaaaa 4558968  T
Q  525 aaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||| ||||||||| |||||| |||||||||||||    
T  4558969 aaacttaaa-gatcaatttattacaattaaataacttaaa 4559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 332 - 583
Target Start/End: Original strand, 8198509 - 8198759
Alignment:
Q  332 tatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttaca 430  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| |||  || | |||||| || |||||||||||||||||||  || || ||||     
T  8198509 tatttttcttaacacttaggt--tttaagttatttaattgaaacttttaggctccaactaacttacatttttaagatctgaaatcccctaaattgttacg 8198606  T
Q  431 gttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaact 529  Q
    |||||||| |||| |||||||||||||||||        ||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||    
T  8198607 gttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaact 8198706  T
Q  530 taaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 583  Q
    |||| || |||||| |||||| ||| ||||||||| || || |||| |||||||    
T  8198707 taaa-gaccaatttgttacaattaactaacttaaaggatttctggtataattta 8198759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 332 - 583
Target Start/End: Original strand, 8203269 - 8203519
Alignment:
Q  332 tatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttaca 430  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| |||  || | |||||| || |||||||||||||||||||  || || ||||     
T  8203269 tatttttcttaacacttaggt--tttaagttatttaattgaaacttttaggctccaactaacttacatttttaagatctgaaatcccctaaattgttacg 8203366  T
Q  431 gttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaact 529  Q
    |||||||| |||| |||||||||||||||||        ||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||    
T  8203367 gttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaact 8203466  T
Q  530 taaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 583  Q
    |||| || |||||| |||||| ||| ||||||||| || || |||| |||||||    
T  8203467 taaa-gaccaatttgttacaattaactaacttaaaggatttctggtataattta 8203519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 500 - 583
Target Start/End: Complemental strand, 45385921 - 45385838
Alignment:
Q  500 ttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 583  Q
    ||||||||| ||||||||||| |||||||||||| |  |||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  45385921 ttaaaggacgtaagtggtacgaaaaaaacttaaagggccaatttgttacaattaaataacttaaaggacctatggtgtaattta 45385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 469 - 583
Target Start/End: Complemental strand, 4923542 - 4923428
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 568  Q
    ||||||||  ||||| ||| |||| |||||| ||||  |||||| ||||||| ||||||| |||||||||||||| ||| || |||| ||||||| ||||    
T  4923542 ttaaaggattaacttattacaatttattaacgtaaaaaacctaaatggtacggaaaaaacataaatgatcaatttattataattaaaaaacttaagagac 4923443  T
Q  569 ttatggtgtaattta 583  Q
     |  |||||||||||    
T  4923442 atccggtgtaattta 4923428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 671
Target Start/End: Complemental strand, 8266027 - 8265959
Alignment:
Q  604 ttttttgtatggttcttaactaaactacaaa-aatttctttaaatttataattttttcaaagtttgtta 671  Q
    ||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  8266027 tttttcgtatgattcttaacttaactacatacaatttctttaaatttataattttctcaaattttgtta 8265959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 469 - 564
Target Start/End: Complemental strand, 42054059 - 42053964
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||| ||||||||| ||||||  ||||||||| ||||||||| ||   | |||||||||| ||| || || ||| ||||||||||||||||    
T  42054059 ttaaaggactaacttgttaaaattaaacaacttaaagaacctaagtgatataaacaaaacttaaaggattaacttattataactaaataacttaaa 42053964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 328 - 409
Target Start/End: Original strand, 6739472 - 6739554
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgt-aactttaggtcccgaataacttgcagttttaagatct 409  Q
    |||||||||||  ||||| ||||||| |||||||||||||||||| ||||||| | | | |||||||| || |||||||||||    
T  6739472 taagtattttttgtaacatttaggtcatttaagttatttaattgtaaactttaagcctctaataacttacatttttaagatct 6739554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 475 - 564
Target Start/End: Original strand, 3289442 - 3289531
Alignment:
Q  475 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||||||| |||||||| | ||||| ||  |||||| |||  |||||||||||| || |||||| |||||| ||||||| |||||    
T  3289442 gaccaacttgttacaattaattcaattaaaagatttaagtgatacaaaaaaaacttaaaagaccaatttattacaattaaataatttaaa 3289531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 42054042 - 42054102
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgta 373  Q
    |||||||||||  | |||||||||||| || |||||||||  |||||||||||||||||||    
T  42054042 aacaagttagtcctttaagtatttttcctatcacttaggttctttaagttatttaattgta 42054102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 581
Target Start/End: Complemental strand, 4558745 - 4558680
Alignment:
Q  515 ggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 581  Q
    |||||| |||||||||||| || |||||| |||||| |||||||||||| ||| |||| ||||||||    
T  4558745 ggtacgaaaaaaacttaaa-gaccaatttattacaattaaataacttaagagaattatcgtgtaatt 4558680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 4923553 - 4923607
Alignment:
Q  341 taacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 394  Q
    ||||||||||||  ||||||||||||||||| ||| ||||||| |||||||||||    
T  4923553 taacacttaggtactttaagttatttaattgcaacttttaggttccgaataactt 4923607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 506 - 564
Target Start/End: Complemental strand, 8198477 - 8198419
Alignment:
Q  506 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8198477 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8198419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 506 - 564
Target Start/End: Complemental strand, 8203237 - 8203179
Alignment:
Q  506 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8203237 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8203179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 585
Target Start/End: Original strand, 32546464 - 32546538
Alignment:
Q  510 taagtggtacgtaaaa-aacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 585  Q
    ||||||||||| |||| |||||||||||||||||| |||| | |||| ||||||||  || | ||||||||||||||    
T  32546464 taagtggtacgaaaaataacttaaatgatcaatttattacgattaaaaaacttaaa--acctctggtgtaatttaac 32546538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 328 - 570
Target Start/End: Complemental strand, 16419837 - 16419591
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 426  Q
    ||||||||| || ||||||||||||| ||||||||||||||||| ||| |||||| ||| |||||||| || || |||||||| ||||||||||| || |    
T  16419837 taagtatttgtcgtaacacttaggtcttttaagttatttaattgaaacttttaggccccaaataacttacatttctaagatctaaaatccctcaaattgt 16419738  T
Q  427 tacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac---gtaa 523  Q
    ||| |||||||| |||| |||| | ||||||||||       ||||| ||||||||||||| |||||||||||||||| || |||| ||||||     ||    
T  16419737 tacggttaaataacttaaaggatcaaattggtacgaaaaaacttaaatgaccaacttgttacaattaattaacttaaatgatctaattggtacaaaagaa 16419638  T
Q  524 aaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 570  Q
    || |||| |||||||||||| |||||| ||||||||||||| |||||    
T  16419637 aatacttcaatgatcaatttgttacaattaaataacttaaaggactt 16419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 329 - 456
Target Start/End: Complemental strand, 196238 - 196111
Alignment:
Q  329 aagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttctt 427  Q
    |||||| ||||  |||||||||||| |||||||||||||||||||||||| | | || ||||||||| || ||||||||| |||||| |||||| || ||    
T  196238 aagtatatttcgaaacacttaggtc-tttaagttatttaattgtaacttttaagccctgaataacttacatttttaagatatgaaatacctcaaattgtt 196140  T
Q  428 acagttaaatagcttagaggacctaattg 456  Q
    || ||||| || |||| ||||||||||||    
T  196139 acggttaagtaacttaaaggacctaattg 196111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 583
Target Start/End: Original strand, 12458392 - 12458504
Alignment:
Q  472 aaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 570  Q
    ||||||||||||||| ||||| ||||||||||||||||||||  |||| | ||||||||||||  | ||| || |||||| ||||||||||||| |||||    
T  12458392 aaggaccaacttgttttaatttattaacttaaaggacctaagaagtacgggaaaaaacttaaagtaccaaattgttacaattaaataacttaaaggactt 12458491  T
Q  571 atggtgtaattta 583  Q
     | ||||||||||    
T  12458492 ctagtgtaattta 12458504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 426 - 564
Target Start/End: Complemental strand, 33547889 - 33547750
Alignment:
Q  426 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaa- 524  Q
    ||||| ||||||| |||| ||||||||| ||||| |       ||||| ||| ||||||||| |||||||||||||||||||| ||||||| ||  |||     
T  33547889 ttacaattaaataacttaaaggacctaaatggtatgaaaaaacttaaaagacaaacttgttacaattaattaacttaaaggacataagtggaacaaaaat 33547790  T
Q  525 aaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||| || |||||| |||||| |||||||||||||    
T  33547789 aaacttaaaggaccaatttgttacaattaaataacttaaa 33547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 313 - 461
Target Start/End: Original strand, 17411121 - 17411270
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtc-ccgaataacttgcagttttaagatctga 411  Q
    |||||||||||  | ||| |||||||| ||| || || ||| ||| ||||||||||||||||| ||  ||| ||||||||||| || |||||||||||||    
T  17411121 aacaagttagtcttttaaatatttttcgtaatacataagtcttttgagttatttaattgtaacgtttagtctccgaataacttacatttttaagatctga 17411220  T
Q  412 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 461  Q
    |||||| ||| || ||||  ||||||| |||| || || |||||||||||    
T  17411221 aatcccccaaattattacgattaaataacttaaagtacataattggtacg 17411270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 455
Target Start/End: Complemental strand, 28477509 - 28477384
Alignment:
Q  331 gtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttac 429  Q
    ||||||||||||||| ||||||  ||||| ||||||||| |||| ||| ||| |||||||||||| || ||||||||||| ||||| |  || || ||||    
T  28477509 gtatttttcataacagttaggttctttaaattatttaatcgtaatttttaggccccgaataacttacatttttaagatctaaaatcgcctaaattattac 28477410  T
Q  430 agttaaatagcttagaggacctaatt 455  Q
    |||| |||| |||| || ||||||||    
T  28477409 agttcaataacttaaagaacctaatt 28477384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 455
Target Start/End: Complemental strand, 29789961 - 29789836
Alignment:
Q  331 gtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttac 429  Q
    ||||||||||||||| ||||||  ||||| ||||||||| |||| ||| ||| |||||||||||| || ||||||||||| ||||| |  || || ||||    
T  29789961 gtatttttcataacagttaggttctttaaattatttaatcgtaatttttaggccccgaataacttacaattttaagatctaaaatcgcctaaattattac 29789862  T
Q  430 agttaaatagcttagaggacctaatt 455  Q
    |||| |||| |||| || ||||||||    
T  29789861 agttcaataacttaaagaacctaatt 29789836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 502
Target Start/End: Original strand, 7004200 - 7004390
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 411  Q
    |||||||||||  | |||||||||||  || |||||| ||| ||||||||||||||||| ||| ||||   || |||||||||  | ||||||||||| |    
T  7004200 aacaagttagtcctttaagtattttttgtatcacttatgtc-tttaagttatttaattgcaacatttaaaccctgaataacttatacttttaagatctaa 7004298  T
Q  412 aatccctcaatttcttacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaactta 502  Q
    |||  ||||| || |||| |||||||| |||| || ||||||||||||| |        ||||||| |||||||||||||||||| ||||||    
T  7004299 aatttctcaaattgttacggttaaataacttaaagaacctaattggtacagagaaaacataaaggatcaacttgttataattaataaactta 7004390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
Q  253 tatcacttacgtcatttaagttatttaattataacaagttagt 295  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaattgtaacaagttagt 17411131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 469 - 565
Target Start/End: Original strand, 10544282 - 10544376
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 565  Q
    ||||| || |||||| ||||||||||||||||||| ||| |||| | ||||| ||||||||||||   ||||||| |||||  ||||||||||||||    
T  10544282 ttaaatgatcaacttattataattaattaacttaatggatctaactagtacgaaaaaaacttaaa--gtcaatttgttacagataaataacttaaaa 10544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 347 - 443
Target Start/End: Complemental strand, 32548235 - 32548138
Alignment:
Q  347 ttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagctta 443  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||| ||| || ||||||||| | |||| || ||| || |||| |||||||| ||||    
T  32548235 ttaggtcctttaagttatttaattgtaacttttagatcccgaatagcttacatttttaagatttaaaataccgcaaattgttacggttaaataactta 32548138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 477 - 533
Target Start/End: Complemental strand, 7202356 - 7202300
Alignment:
Q  477 ccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 533  Q
    ||||| ||||| ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  7202356 ccaacatgttacaattaattaacataaaggacctaaatggtacgaaaaaaacttaaa 7202300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 334 - 417
Target Start/End: Original strand, 33547849 - 33547933
Alignment:
Q  334 tttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccc 417  Q
    ||||||||| || ||||||| ||||||||||||||||||||| |||| ||  ||||||||||  | ||||||| |||||||||||    
T  33547849 tttttcataccatttaggtcctttaagttatttaattgtaacttttaagtttcgaataacttaaatttttaaggtctgaaatccc 33547933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 461
Target Start/End: Complemental strand, 7202419 - 7202313
Alignment:
Q  356 ttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaat 454  Q
    |||||||||||||||||||| |||||| ||||||||||||  | ||||||||||| ||||| | |||  | ||||| |||| || | || |||||||||     
T  7202419 ttaagttatttaattgtaacttttaggccccgaataacttaaatttttaagatctaaaatctcccaacatgttacaattaattaacataaaggacctaaa 7202320  T
Q  455 tggtacg 461  Q
    |||||||    
T  7202319 tggtacg 7202313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 10544136 - 10544210
Alignment:
Q  336 tttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatct 409  Q
    |||| ||||||||||||| ||||||||| ||||||||||| ||||||||  |||||| || || |||||||||||    
T  10544136 tttcgtaacacttaggtcatttaagttagttaattgtaacttttaggtcttgaataatttacatttttaagatct 10544210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 455
Target Start/End: Complemental strand, 29693383 - 29693282
Alignment:
Q  355 tttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaa 453  Q
    ||||| ||||||||| |||||||| ||| |||||||||||| || ||||||||||| ||||| |  || || |||||||| |||| |||| || ||||||    
T  29693383 tttaaattatttaatcgtaacttttaggacccgaataacttacatttttaagatctaaaatcgcctaaattattacagttcaataacttaaagaacctaa 29693284  T
Q  454 tt 455  Q
    ||    
T  29693283 tt 29693282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 566
Target Start/End: Complemental strand, 31314609 - 31314513
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 566  Q
    ||||| ||| || ||||||||||||| |||||||||  || |||||| |||  ||||||||||||||||||| || ||| || ||||||||| |||||    
T  31314609 ttaaatgactaatttgttataattaaataacttaaaa-acataagtgatactgaaaaaacttaaatgatcaacttgttataattaaataactcaaaag 31314513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
Q  252 gtatcacttacgtcatttaagttatttaattataacaagttagt 295  Q
    ||||||||||||||||||||||||||||||| ||| || |||||    
T  196287 gtatcacttacgtcatttaagttatttaattgtaataatttagt 196244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 438
Target Start/End: Complemental strand, 9405362 - 9405267
Alignment:
Q  344 cacttaggtcgtttaagttatttaattgtaactt-taggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaata 438  Q
    ||||||| || |||||||||||||||||||| || ||  | ||||||||||   | |||||||||||||||| |||||| || |||| ||||||||    
T  9405362 cacttagatcctttaagttatttaattgtaatttataaatgccgaataactaaaatttttaagatctgaaattcctcaaattgttacggttaaata 9405267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 564
Target Start/End: Complemental strand, 196135 - 196063
Alignment:
Q  491 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    |||| ||||||||||||||||| || |||  ||||||||||||| |||||||| |||||| ||| ||| |||||    
T  196135 ttaagtaacttaaaggacctaattgatactgaaaaaacttaaat-atcaatttgttacaattaattaatttaaa 196063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Complemental strand, 33547785 - 33547744
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacct 510  Q
    |||||||||||| |||||| |||||| |||||||||||||||    
T  33547785 ttaaaggaccaatttgttacaattaaataacttaaaggacct 33547744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 16841060 - 16840857
Alignment:
Q  5 agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgata------agataacaaattcatttaagtagcaatcacagtgagtaa 98  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||||||||||      |||||||||||||||||||||| |||||||| ||| |||    
T  16841060 agactttttgaacgtaattagcactaa-gttggaatcttattgcaagttgtgatattaataagataacaaattcatttaagtaccaatcacaatgaataa 16840962  T
Q  99 tgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaa 188  Q
    | |||||||||    ||||||||||||||||||||||      |||||||| ||||||||||| |||||||||||||||| |||| | | ||||||||||    
T  16840961 tttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaaatgtatttagaagcggagacttagacttcgtcaactatccatactttaa 16840862  T
Q  189 agagc 193  Q
    |||||    
T  16840861 agagc 16840857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 606 - 779
Target Start/End: Complemental strand, 16840796 - 16840622
Alignment:
Q  606 ttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaa 705  Q
    |||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || | ||||||||| | | ||||||||||||    
T  16840796 ttttttatagtttttaactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaa 16840697  T
Q  706 gaaaaagtatcagatgtcatcggata-tcgatactctactcgtgagttctacggtagaccacctttataattggt 779  Q
    |||||||||| |  ||||||  |||| | ||||||||||||||||||||||  ||| ||||| ||||||| ||||    
T  16840696 gaaaaagtattaagtgtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggt 16840622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 313 - 444
Target Start/End: Original strand, 22519386 - 22519518
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 411  Q
    |||||||||||  | |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| || |||||||||||||    
T  22519386 aacaagttagtcctttaagtatttttcgtaacacttaggtcctttaagttatttaattgtaacttttaggtcccaaataacttacatttttaagatctga 22519485  T
Q  412 aatccctcaatttcttacagttaaatagcttag 444  Q
    |||||| ||| ||  ||| |||||||| |||||    
T  22519486 aatcccccaaattgctacggttaaataacttag 22519518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 313 - 564
Target Start/End: Original strand, 31095124 - 31095377
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 411  Q
    ||||||||| | || |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||||||  ||||||||| || |||||||||||||    
T  31095124 aacaagttaatcatttaagtattgtttgtaacacttaggttctttaagttatttaattgtaacttttaggtcttgaataacttacatttttaagatctga 31095223  T
Q  412 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggaccta 511  Q
    |||||   || ||  ||  || |||||||||| | ||||| ||||||| |       ||| ||||  ||||||||| || ||||||||||||| ||||||    
T  31095224 aatcctaaaaattgatatggtaaaatagcttaaatgaccttattggtaggaaaaaacttataggattaacttgttacaactaattaacttaaaagaccta 31095323  T
Q  512 agtggtacgtaaaaaacttaaat-gatcaatttcttacaactaaataacttaaa 564  Q
    | ||||||| ||| || |||| | ||  ||||| |||||| |||||||||||||    
T  31095324 aatggtacgaaaataatttaagtggacaaatttattacaattaaataacttaaa 31095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 469 - 583
Target Start/End: Original strand, 22519807 - 22519921
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga 567  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||||| || || |||||| |||||| ||||||| || |||||    
T  22519807 ttaaaggatcaacttgttataattaattaacttaaaagacctaagtggtacggaaaaaaactttaaggaccaatttgttacaattaaataa-tttaaaga 22519905  T
Q  568 cttatggtgtaattta 583  Q
    | | ||||||||||||    
T  22519906 cctctggtgtaattta 22519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 564
Target Start/End: Original strand, 48194394 - 48194483
Alignment:
Q  475 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||||||| | |||| |||||||||||||||||| |||||| ||||||| ||||||||||| || |||||| |||||||||||||    
T  48194394 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 48194483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 313 - 443
Target Start/End: Complemental strand, 49291335 - 49291205
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 412  Q
    ||||||||||| || ||||||||||| |||||| ||| ||| ||||||||||||||||||||||||    ||||| |||||| || ||| ||||||||||    
T  49291335 aacaagttagtcatttaagtattttttataacatttaagtcttttaagttatttaattgtaacttttaaacccgagtaacttacattttgaagatctgaa 49291236  T
Q  413 atccctcaatttcttacagttaaatagctta 443  Q
    || ||| || || ||||  ||||||| ||||    
T  49291235 attcctgaaattgttacgattaaataactta 49291205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 491 - 583
Target Start/End: Original strand, 33617920 - 33618010
Alignment:
Q  491 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 583  Q
    ||||||||||||||||||||||| ||||||  ||||||||||| || |||||| |||||| ||||||||||||| ||| | | ||||||||||    
T  33617920 ttaattaacttaaaggacctaagcggtacg--aaaaacttaaaggaccaatttattacaattaaataacttaaatgacctcttgtgtaattta 33618010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 328 - 564
Target Start/End: Complemental strand, 20141983 - 20141745
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaat-ccctcaatttc 425  Q
    |||||||||||| |||  |||| ||| |||||||| ||||||||||| ||| ||| ||  |||||||| || ||||||||||| |||| |||  || ||     
T  20141983 taagtatttttcgtaatgcttaagtc-tttaagttgtttaattgtaatttttaggcccataataacttacatttttaagatctaaaatacccaaaaatta 20141885  T
Q  426 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 525  Q
    |||| |||||||| |||| | ||||||||| |||||        | || ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||    
T  20141884 ttacggttaaataacttaaatgacctaattagtacgaataaaacttaaagaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaa 20141785  T
Q  526 a-acttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    | |||||||  | | | || |||||| |||||||||||||    
T  20141784 agacttaaagaacctacttattacaattaaataacttaaa 20141745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 564
Target Start/End: Complemental strand, 22889674 - 22889586
Alignment:
Q  476 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22889674 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22889586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 564
Target Start/End: Complemental strand, 22941338 - 22941250
Alignment:
Q  476 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22941338 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
Q  253 tatcacttacgtcatttaagttatttaattataacaagtta 293  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31095092 tatcacttacgtcctttaagttatttaattataacaagtta 31095132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 489 - 564
Target Start/End: Original strand, 53769786 - 53769861
Alignment:
Q  489 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    |||||| ||| ||||| ||||||||||||| | |||| ||||||||||| ||||| |||||| ||||||| |||||    
T  53769786 aattaaataatttaaaagacctaagtggtatgaaaaatacttaaatgattaatttattacaattaaataatttaaa 53769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 479 - 585
Target Start/End: Complemental strand, 2323372 - 2323266
Alignment:
Q  479 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 578  Q
    ||||||||| ||||||||||||| || || |||  ||||||  |||||||||||| |   ||||| |||||| ||||||| ||||| ||||| || ||||    
T  2323372 aacttgttacaattaattaacttgaaagaactacatggtaccaaaaaaacttaaagggctaatttgttacaattaaataatttaaaggacttttgatgta 2323273  T
Q  579 atttaac 585  Q
    |||||||    
T  2323272 atttaac 2323266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 570
Target Start/End: Original strand, 42676809 - 42676883
Alignment:
Q  496 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 570  Q
    ||||||||| |||||||||| |||| ||||||| |||| ||| || || |||||| ||| |||||||||||||||    
T  42676809 taacttaaatgacctaagtgatacgaaaaaaacataaaggattaacttgttacaattaattaacttaaaagactt 42676883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 378
Target Start/End: Complemental strand, 51580140 - 51580077
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt 378  Q
    |||||||||||| | |||||||||||| ||||| ||||||| |||| |||||||||||||||||||    
T  51580140 aacaagttagttct-taagtatttttcgtaacatttaggtc-tttacgttatttaattgtaacttt 51580077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 479 - 562
Target Start/End: Original strand, 34013780 - 34013861
Alignment:
Q  479 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactta 562  Q
    ||||| ||||| |||||||| ||||||||| ||||| ||| | |||||  ||||||||| ||||| |||||| |||||||||||    
T  34013780 aacttattatatttaattaatttaaaggacttaagtagtatgaaaaaa--ttaaatgattaatttgttacaattaaataactta 34013861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 559
Target Start/End: Complemental strand, 22519448 - 22519373
Alignment:
Q  484 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataac 559  Q
    |||| |||||| |||||||||||||||||||| |||| |||| ||||||| ||  || || |||||| ||||||||    
T  22519448 gttacaattaaataacttaaaggacctaagtgttacgaaaaatacttaaaggactaacttgttacaattaaataac 22519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 565
Target Start/End: Original strand, 34717567 - 34717660
Alignment:
Q  470 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 565  Q
    |||| ||| ||||||||  |||||||||||||||| ||| || ||| |||| ||||||||||||| |  ||||| |||||| ||||||||||||||    
T  34717567 taaaagacaaacttgtttcaattaattaacttaaaagacttaggtgatacg-aaaaaacttaaat-acaaatttattacaattaaataacttaaaa 34717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 520
Target Start/End: Original strand, 40070309 - 40070360
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacg 520  Q
    |||||||| |||||||||||| |||||||||||||| || ||||||| ||||    
T  40070309 ttaaaggatcaacttgttatatttaattaacttaaatgatctaagtgatacg 40070360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 479 - 533
Target Start/End: Complemental strand, 31095131 - 31095078
Alignment:
Q  479 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 533  Q
    |||||||||||||||| ||||||||||||| |||||| || | ||||||||||||    
T  31095131 aacttgttataattaaataacttaaaggacgtaagtgatatg-aaaaaacttaaa 31095078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 53769828 - 53769786
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaatt 370  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||    
T  53769828 taagtatttttcataccacttaggtcttttaaattatttaatt 53769786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Complemental strand, 22519354 - 22519313
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacct 510  Q
    ||||||||||| | |||||||||||| |||||||||||||||    
T  22519354 ttaaaggaccagcatgttataattaactaacttaaaggacct 22519313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 533
Target Start/End: Complemental strand, 48194239 - 48194179
Alignment:
Q  472 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 533  Q
    |||||||||||||||| | |||| ||||||||||  | ||||||||||| ||||||||||||    
T  48194239 aaggaccaacttgttacagttaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 48194179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 313 - 583
Target Start/End: Original strand, 41331168 - 41331439
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctga 411  Q
    |||||||||||  | ||| ||||||||||| |||||||||| |||||||||||||||| ||||||| ||||  ||||||||||  | ||||| |||||      
T  41331168 aacaagttagtagtttaaatatttttcatagcacttaggtc-tttaagttatttaattataacttttaggtatcgaataacttcaatttttaggatctag 41331266  T
Q  412 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacct 510  Q
    ||||||  || || |||| |||||||| |||| | ||||| ||||||||         |||||| ||||||||||||||||| ||||||||||| || ||    
T  41331267 aatccccaaaattgttacggttaaataacttaaatgacctcattggtacatgaaaaacttaaagaaccaacttgttataatttattaacttaaatgagct 41331366  T
Q  511 aagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 583  Q
    | ||||||||  ||||||||||||||||||||| |||||| ||||||||||||| |||||||| | |||||||    
T  41331367 aggtggtacgagaaaaacttaaatgatcaatttattacaattaaataacttaaatgacttatgatataattta 41331439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 328 - 583
Target Start/End: Original strand, 18128375 - 18128632
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttct 426  Q
    |||||||| ||| |||||||||| || ||||| || |||||||||||||||    ||  ||||||||| || |||||||||||||||| |  ||| || |    
T  18128375 taagtattcttcgtaacacttagatcctttaaattttttaattgtaacttttaaaccttgaataacttacatttttaagatctgaaattcgccaaattgt 18128474  T
Q  427 tacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 525  Q
    ||  |||||||| |||| |||| |||||| |||||        |||||| |||||||| ||| ||||||||||||||||| |||||||| ||||| ||||    
T  18128475 tatggttaaataacttaaaggatctaattcgtacgaaaaaaaattaaagcaccaacttattacaattaattaacttaaagaacctaagtagtacg-aaaa 18128573  T
Q  526 aactt-aaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 583  Q
    ||||| ||| || |||||| |||||  ||||||| ||||| ||| ||||||||||||||    
T  18128574 aacttaaaaggaccaatttattacatttaaataatttaaaggacctatggtgtaattta 18128632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 472 - 565
Target Start/End: Original strand, 30551947 - 30552040
Alignment:
Q  472 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 565  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  30551947 aaggaccaacttgttacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 30552040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 565
Target Start/End: Original strand, 6589558 - 6589651
Alignment:
Q  472 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 565  Q
    |||||||||||| ||| |||| ||||||||||| ||||||||||||||  |||||||||||| ||||||||| |||||| ||||| ||||||||    
T  6589558 aaggaccaacttattacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggatcaatttattacaattaaattacttaaaa 6589651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 489 - 568
Target Start/End: Complemental strand, 12422123 - 12422044
Alignment:
Q  489 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 568  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||| | |||||||||||||||    
T  12422123 aattaatttacttaaaggacctaagtggtatgaaaaaaacttaaatgaccaatttattacaatttaataacttaaaagac 12422044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 478 - 585
Target Start/End: Original strand, 32804629 - 32804736
Alignment:
Q  478 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgt 577  Q
    |||||||||  |||||||||||||||| ||| ||||| ||| | ||||||| |||| ||||||||| |||||| |||||| | |||||||||| ||||||    
T  32804629 caacttgttgcaattaattaacttaaatgacttaagttgtatgaaaaaaacctaaaagatcaatttattacaattaaatatcctaaaagacttgtggtgt 32804728  T
Q  578 aatttaac 585  Q
    ||||||||    
T  32804729 aatttaac 32804736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 564
Target Start/End: Complemental strand, 1532285 - 1532197
Alignment:
Q  476 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    |||||||||||||| |||| |||||||||||||||||| |||||  ||||||  ||||||||||| || |||||| |||||||||||||    
T  1532285 accaacttgttatagttaaataacttaaaggacctaagaggtacaaaaaaaatgtaaatgatcaacttattacaattaaataacttaaa 1532197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 387 - 575
Target Start/End: Complemental strand, 20389822 - 20389633
Alignment:
Q  387 aataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgtt 486  Q
    |||||||| || ||||||||||| |||| |  ||| || ||||||||||||| |||| |||| |||||| |||||        | || ||||||||||||    
T  20389822 aataacttacatttttaagatctaaaattcgccaaattgttacagttaaataacttaaaggatctaattcgtacgaaaaaaacttaaagaccaacttgtt 20389723  T
Q  487 ataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 575  Q
    | ||||||||||||||||| | |||||| |||||  ||||||||||||  |  | ||| |||||  ||||||||||||||||| ||||||    
T  20389722 acaattaattaacttaaagcatctaagtagtacgaaaaaaaacttaaagaactactttgttacatttaaataacttaaaagacctatggt 20389633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 564
Target Start/End: Original strand, 28003341 - 28003434
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    |||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||| || |||||| || |||||| ||||||| |||||    
T  28003341 ttaaaggatcaacttgttacatttaattaacttaaaggacctaattggtacg-aaaaaactt-aacgatcaacttgttacaattaaataatttaaa 28003434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 328 - 414
Target Start/End: Original strand, 48447315 - 48447402
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat 414  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||| |||| | ||  |||||||| || ||||||||||| ||||    
T  48447315 taagtatttttcgtaacgcttaggtcctttaagttatttaattgtaacttttatgcccaaaataacttacatttttaagatctaaaat 48447402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 471 - 564
Target Start/End: Complemental strand, 5755685 - 5755594
Alignment:
Q  471 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||||||  ||||| ||||| |  |||||| |||||| |||||||||||||    
T  5755685 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg--aaaaaattaaagggccaatttgttacaattaaataacttaaa 5755594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 328 - 417
Target Start/End: Original strand, 12264801 - 12264890
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaaatccc 417  Q
    |||||||||||| || |||||||||| || ||||||||||| ||||||||| || |  ||||||||| || ||| ||||| |||||||||    
T  12264801 taagtatttttcgtaccacttaggtctttcaagttatttaagtgtaacttttggccatgaataacttacattttaaagatttgaaatccc 12264890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 12422342 - 12422262
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagat 407  Q
    |||||||| ||  |||||||||  || ||||||||||||||||||||| |||||||||||||||||||  | |||||||||    
T  12422342 taagtattgtttgtaacacttaaatcctttaagttatttaattgtaacttttaggtcccgaataacttatacttttaagat 12422262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 585
Target Start/End: Original strand, 12422352 - 12422455
Alignment:
Q  481 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 580  Q
    ||||||| |||||| ||||||||| ||| |||||| |||  |||||||||||| ||| ||||| |||||| |||||||||||||  | ||  ||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgataca-aaaaaacttaaaggatgaatttgttacaattaaataacttaaagaaattccggtgtaat 12422450  T
Q  581 ttaac 585  Q
    |||||    
T  12422451 ttaac 12422455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 585
Target Start/End: Original strand, 21920965 - 21921164
Alignment:
Q  385 cgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaactt 483  Q
    |||||||||| || ||||||| ||| |||| || ||| || |||  |||||||| |||| ||||||||||| |||||        |||||  | ||||||    
T  21920965 cgaataacttacatttttaaggtctaaaattccccaaatttttatggttaaataacttaaaggacctaattagtacggaaaaaacttaaataaacaactt 21921064  T
Q  484 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 583  Q
    |||| | ||||||||||||||| || |||||||||   |||||||||||||||  ||||  ||| |  ||||||||||||| |||||||| |||||||||    
T  21921065 gttacagttaattaacttaaag-acataagtggtaaa-aaaaaacttaaatgacaaattagttatagttaaataacttaaatgacttatgatgtaattta 21921162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 28002279 - 28002330
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttta 379  Q
    |||||| |||||||| |||||||||| |||||||| ||||||||||||||||    
T  28002279 taagtacttttcataccacttaggtcctttaagttgtttaattgtaacttta 28002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 550
Target Start/End: Complemental strand, 32918595 - 32918529
Alignment:
Q  485 ttataattaattaacttaaaggacctaagtggtacgtaa-aaaacttaaatgatcaatttcttacaa 550  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||| ||| ||||||||| ||||||    
T  32918595 ttataattaattaacttaaaggagctaagtgatacgaaataaaactcaaaagatcaatttattacaa 32918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 533
Target Start/End: Original strand, 1532441 - 1532501
Alignment:
Q  472 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 533  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  1532441 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 1532501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 489 - 565
Target Start/End: Complemental strand, 6586938 - 6586862
Alignment:
Q  489 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 565  Q
    |||| ||||||||||| ||||||||| ||||  |||||| ||||  ||||||||| |||||| ||||| ||||||||    
T  6586938 aattgattaacttaaatgacctaagtagtaccaaaaaaatttaagagatcaatttattacaattaaattacttaaaa 6586862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 32857850 - 32857890
Alignment:
Q  334 tttttcataacacttaggtcgtttaagttatttaattgtaa 374  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  32857850 tttttcgtaacacttaggtcttttaagttatttaattgtaa 32857890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 671
Target Start/End: Complemental strand, 21595162 - 21595127
Alignment:
Q  636 atttctttaaatttataattttttcaaagtttgtta 671  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21595162 atttctttaaattcataattttttcaaagtttgtta 21595127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 563
Target Start/End: Complemental strand, 48447362 - 48447283
Alignment:
Q  484 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 563  Q
    |||| |||||| |||||||||||||||||| | |||| |||| |||||||  |  ||||| |||||| ||||||||||||    
T  48447362 gttacaattaaataacttaaaggacctaagcgttacgaaaaatacttaaagtactaatttgttacaattaaataacttaa 48447283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 252 - 290
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
Q  252 gtatcacttacgtcatttaagttatttaattataacaag 290  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  12422390 gtatcacttacgtcttttaagttatttaattttaacaag 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 5762753 - 5762696
Alignment:
Q  470 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa 527  Q
    ||||| |||||||||||| ||||||||||| || |  |||||||||||||| ||||||    
T  5762753 taaagaaccaacttgttacaattaattaacatatattacctaagtggtacggaaaaaa 5762696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 447 - 585
Target Start/End: Original strand, 3866 - 4003
Alignment:
Q  447 gacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttctt 546  Q
    |||||||||||||||       ||||||||||||||||||| ||| ||||||||||||| |||| ||||||| | ||| |||||||||||||||||| ||    
T  3866 gacctaattggtacgaaaaaacttaaaggaccaacttgttacaatcaattaacttaaag-acctcagtggtaggaaaataacttaaatgatcaatttatt 3964  T
Q  547 acaactaaataacttaaaagacttatggtgtaatttaac 585  Q
    |||| |||||||| |||| ||||| ||||||||||||||    
T  3965 acaattaaataacataaatgacttctggtgtaatttaac 4003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 478 - 564
Target Start/End: Original strand, 2277209 - 2277295
Alignment:
Q  478 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||||| |||||| |||||||||||||    
T  2277209 caacttgttacaattaattaacttaaaggacctaagtggtacaaaaaaaacttaaaggatcaatttgttacaattaaataacttaaa 2277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 485 - 565
Target Start/End: Complemental strand, 27533069 - 27532989
Alignment:
Q  485 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 565  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||    
T  27533069 ttataattaaataacttaaaggacgtaagtggtacataaaaaacttaaaagatcaatttattacaattaaataacttaaaa 27532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 469 - 548
Target Start/End: Original strand, 37064689 - 37064768
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 548  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||| ||||| ||||    
T  37064689 ttaaaggaccaacttgttataattaattaacttaaaggacttaagtggtgcgaaaaaaacttaattgattaatttattac 37064768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 481 - 583
Target Start/End: Complemental strand, 15907790 - 15907689
Alignment:
Q  481 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 580  Q
    ||||||||||||||||||||||||| |  ||||||||||| |||||||||||| || |||||| | |||| ||||||||||||| || || |||||||||    
T  15907790 cttgttataattaattaacttaaagaatataagtggtacgaaaaaaacttaaa-gaccaatttatcacaagtaaataacttaaaggatttctggtgtaat 15907692  T
Q  581 tta 583  Q
    |||    
T  15907691 tta 15907689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 469 - 583
Target Start/End: Original strand, 15907944 - 15908058
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 568  Q
    |||||||| |||||||||||||||||||||| ||||  |||||||||||| | ||||||||||||| |  ||||| |||||  |||||| |||||| ||     
T  15907944 ttaaaggatcaacttgttataattaattaacctaaaaaacctaagtggtatgaaaaaaacttaaataactaatttattacagttaaatatcttaaaggat 15908043  T
Q  569 ttatggtgtaattta 583  Q
    || ||||||||||||    
T  15908044 ttttggtgtaattta 15908058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 313 - 565
Target Start/End: Complemental strand, 2510263 - 2510015
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcc-cgaataacttgcagttttaagatctga 411  Q
    |||||||||||| | ||| |||||||  |||||||||| || |||||||||||||| ||||| |||  | || |||||||||| || |||||| || |||    
T  2510263 aacaagttagttctttaattattttttgtaacacttagctcctttaagttatttaagtgtaatttttagaccacgaataacttacatttttaaaatatga 2510164  T
Q  412 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggaccta 511  Q
    |||| ||||| || || || |||| || |||| |||| |||||| |||||       |||||||| ||| |||||  |||||||||||||    ||||||    
T  2510163 aatctctcaaattgttgcaattaagtaacttaaaggatctaatttgtacggaaaaacttaaaggaacaatttgttgcaattaattaactt----gaccta 2510068  T
Q  512 agtggtacgtaaaaaa-cttaaatgatcaatttcttacaactaaataacttaaaa 565  Q
    ||||||| | |||||| | ||||  | |||||| |||||| ||||||||||||||    
T  2510067 agtggtatgaaaaaaaacataaa--accaatttattacaattaaataacttaaaa 2510015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 501 - 583
Target Start/End: Original strand, 12807666 - 12807748
Alignment:
Q  501 taaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 583  Q
    |||||||||||||||||| |||||||| |||||  |||||||| | |||| ||||||||||||||||  | ||||||||||||    
T  12807666 taaaggacctaagtggtatgtaaaaaatttaaaaaatcaatttataacaattaaataacttaaaagatctctggtgtaattta 12807748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 443
Target Start/End: Original strand, 3806871 - 3807000
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 412  Q
    ||||||||||| || |||||||||||| || |||||||||| ||| | |||||||||| ||| |||  | || || |||||| || ||||||||| ||||    
T  3806871 aacaagttagtcatttaagtatttttcgtagcacttaggtccttttaattatttaattataatttttagccctgagtaacttacatttttaagatatgaa 3806970  T
Q  413 atccctcaatttcttacagttaaatagctta 443  Q
    ||  ||||| || ||||||||||||| ||||    
T  3806971 atatctcaa-ttgttacagttaaataactta 3807000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
Q  253 tatcacttacgtcatttaagttatttaattataacaagttagttat 298  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaattgtaataagttagttat 18080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 568
Target Start/End: Original strand, 32566875 - 32566969
Alignment:
Q  472 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 568  Q
    |||||| | ||||||| ||||||| |||||||| ||||||| | |||| |||||  | |||| ||||||||||||| ||  ||||||||||||||||    
T  32566875 aaggactagcttgttacaattaataaacttaaatgacctaaatagtacataaaa--cctaaaggatcaatttcttataataaaataacttaaaagac 32566969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 566
Target Start/End: Original strand, 2967707 - 2967794
Alignment:
Q  478 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 566  Q
    ||||||||||||||||||||| |||||||| |||||| | | | ||||||||||||  | |||||| |||  | |||||||||||||||    
T  2967707 caacttgttataattaattaatttaaaggatctaagtagaaggaaaaaaacttaaa-aaacaatttgttaggattaaataacttaaaag 2967794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 469 - 564
Target Start/End: Original strand, 3806998 - 3807091
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    |||||| || ||||||||| |||||||||||||||| ||| ||||| |||  ||||||||||| | || |||||| |||| | ||||||| |||||    
T  3806998 ttaaagtactaacttgttaaaattaattaacttaaaagacataagttgta--taaaaaacttagaggaccaatttgttactattaaataatttaaa 3807091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 328 - 460
Target Start/End: Complemental strand, 12190002 - 12189869
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccc-tcaatttc 425  Q
    ||||||||||   ||||||||||||  ||||| |||||||||||||||||| ||  ||| |||| ||| |  ||| |||||||||||| || | |||||     
T  12190002 taagtattttctgtaacacttaggttctttaatttatttaattgtaacttttagacccctaatatcttacgttttcaagatctgaaattccgttaatttg 12189903  T
Q  426 ttacagttaaatagcttagaggacctaattggtac 460  Q
    | ||||||||||| |||| | ||||||||||||||    
T  12189902 t-acagttaaataacttaaatgacctaattggtac 12189869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 328 - 460
Target Start/End: Complemental strand, 12434430 - 12434297
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccc-tcaatttc 425  Q
    ||||||||||   ||||||||||||  ||||| |||||||||||||||||| ||  ||| |||| ||| |  ||| |||||||||||| || | |||||     
T  12434430 taagtattttctgtaacacttaggttctttaatttatttaattgtaacttttagacccctaatatcttacgttttcaagatctgaaattccgttaatttg 12434331  T
Q  426 ttacagttaaatagcttagaggacctaattggtac 460  Q
    | ||||||||||| |||| | ||||||||||||||    
T  12434330 t-acagttaaataacttaaatgacctaattggtac 12434297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 478 - 548
Target Start/End: Original strand, 45445141 - 45445210
Alignment:
Q  478 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 548  Q
    ||||||||||| ||||| ||| ||| ||||||||| ||||||| |||||||||||| || |||||| ||||    
T  45445141 caacttgttatgattaaataatttacaggacctaattggtacg-aaaaaacttaaacgaccaatttattac 45445210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 587
Target Start/End: Original strand, 41123 - 41216
Alignment:
Q  495 ttaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga-cttatggtgtaatttaacat 587  Q
    ||||||||||  || ||||||||||  |||||||||||| ||  ||||| |||||| ||||||| ||||| || ||  ||||||||||||||||    
T  41123 ttaacttaaataacataagtggtacacaaaaaacttaaaggactaatttgttacaattaaataatttaaaggatctcttggtgtaatttaacat 41216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 8453098 - 8453163
Alignment:
Q  314 acaagttagttatgtaagtatttttcataacacttaggt-cgtttaagttatttaattgtaacttt 378  Q
    |||||||||| || ||||||||| ||||||||||||  | | |||||||||||| |||||||||||    
T  8453098 acaagttagtcatttaagtatttctcataacacttacatccttttaagttatttgattgtaacttt 8453163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 536
Target Start/End: Complemental strand, 32566769 - 32566724
Alignment:
Q  491 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatga 536  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  32566769 ttaaataacttaaaggacttaagtggcacgaaaaaaacttaaatga 32566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 328 - 564
Target Start/End: Complemental strand, 363853 - 363615
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat-ccctcaatttc 425  Q
    |||||||||||| |||  |||| ||| |||||||| |||||||||||| |||||| || ||||||||| || ||||||||||| |||| |||  || ||     
T  363853 taagtatttttcgtaatgcttaagtcatttaagttgtttaattgtaacttttaggcccagaataacttacatttttaagatctaaaatacccaaaaattg 363754  T
Q  426 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 525  Q
    |||| |||||||| |||| | ||||||||| |||||       ||||| ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||    
T  363753 ttacggttaaataacttaaatgacctaattagtacgaaaaaacttaaa-gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaa 363655  T
Q  526 a-acttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    | |||||||  | | |||| |||||| |||||||||||||    
T  363654 agacttaaagaacctatttattacaattaaataacttaaa 363615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 328 - 563
Target Start/End: Original strand, 47726457 - 47726693
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 426  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||| || |    
T  47726457 taagtattgtttgtaacacttaggtgctttaagttatttaattgtaacttttagatcccgaataacttgcatttttaagatatgaaattcctcaaattgt 47726556  T
Q  427 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 525  Q
    ||  || ||||| |  | |||||||  |||||||         ||||||||||| ||||||  |  ||||||||||||| |||||||||| || | ||||    
T  47726557 taaggtaaaataacacaaaggaccttgttggtacaagaaaaacttaaaggaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaa 47726656  T
Q  526 aacttaaatgatcaatttcttacaactaaataacttaa 563  Q
    ||||||||| | |||||| ||||||  |||||||||||    
T  47726657 aacttaaat-accaatttattacaataaaataacttaa 47726693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 328 - 563
Target Start/End: Original strand, 47747763 - 47747999
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 426  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||| || |    
T  47747763 taagtattgtttgtaacacttaggtgctttaagttatttaattgtaacttttagatcccgaataacttgcatttttaagatatgaaattcctcaaattgt 47747862  T
Q  427 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 525  Q
    ||  || ||||| |  | |||||||  |||||||         ||||||||||| ||||||  |  ||||||||||||| |||||||||| || | ||||    
T  47747863 taaggtaaaataacacaaaggaccttgttggtacaagaaaaacttaaaggaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaa 47747962  T
Q  526 aacttaaatgatcaatttcttacaactaaataacttaa 563  Q
    ||||||||| | |||||| ||||||  |||||||||||    
T  47747963 aacttaaat-accaatttattacaataaaataacttaa 47747999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 565
Target Start/End: Complemental strand, 16554396 - 16554303
Alignment:
Q  472 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 565  Q
    |||||||||||||||| |||| ||||||||||| ||| ||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  16554396 aaggaccaacttgttacaattgattaacttaaatgacttaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 16554303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 329 - 459
Target Start/End: Complemental strand, 29955000 - 29954870
Alignment:
Q  329 aagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttctt 427  Q
    ||||||||| | || |||||||||| ||||||||||||||||||||||||  ||||| ||||||||| || ||||||||| |||||| |  ||| || ||    
T  29955000 aagtattttccgtaccacttaggtc-tttaagttatttaattgtaacttttagtcccagaataacttacatttttaagatatgaaattctccaaattatt 29954902  T
Q  428 acagttaaatagcttagaggacctaattggta 459  Q
    || |||||||| |||| |||||||||||||||    
T  29954901 acggttaaataacttaaaggacctaattggta 29954870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 475 - 564
Target Start/End: Complemental strand, 18470279 - 18470189
Alignment:
Q  475 gaccaacttgttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||||||| | |||| |||||||||||||||||| ||||||  ||||||| ||||||||||| || |||||| |||||||||||||    
T  18470279 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 18470189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 469 - 564
Target Start/End: Original strand, 802251 - 802346
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||||||||||||||| |||||||||| | ||||||  ||||||||||| |||||  ||||| || |||||| |||||  |||||||||||||    
T  802251 ttaaaggaccaacttgttacaattaattaattcaaaggatataagtggtacgaaaaaagtttaaaggaccaatttattacatttaaataacttaaa 802346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 583
Target Start/End: Original strand, 12656368 - 12656474
Alignment:
Q  476 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 575  Q
    |||||||| ||| ||||||||||||||||||   ||||||||||| |||||| |||||  |||||| | |||||| ||||||||||||| |||||  |||    
T  12656368 accaacttattacaattaattaacttaaagggtttaagtggtacg-aaaaaatttaaaaaatcaatatgttacaattaaataacttaaaggactttcggt 12656466  T
Q  576 gtaattta 583  Q
    ||||||||    
T  12656467 gtaattta 12656474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 478 - 564
Target Start/End: Complemental strand, 16026194 - 16026108
Alignment:
Q  478 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    |||||| ||| | |||| |||||||||||||||||| |||||| ||||||  |||||||| || || |||||| |||||||||||||    
T  16026194 caacttattacagttaaataacttaaaggacctaagaggtacgaaaaaaatgtaaatgattaacttattacaattaaataacttaaa 16026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 389 - 585
Target Start/End: Original strand, 11016877 - 11017075
Alignment:
Q  389 taacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn--ttaaaggaccaacttgtt 486  Q
    |||||| || ||||||||| | ||||| ||||| || |||| ||||||||| ||| ||||||||||||| |||         |||||| | |||||||||    
T  11016877 taacttacatttttaagattttaaatctctcaaattgttacggttaaatagtttaaaggacctaattggaacgaaaaacaacttaaag-atcaacttgtt 11016975  T
Q  487 ataattaattaacttaaaggacctaagtggtacgtaaaaaacttaa-atgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 585  Q
    | |||||| |||||||||  ||||||||| || | ||||||  ||| | ||| ||||| ||| || ||||||||||||| ||| ||| ||||||||||||    
T  11016976 acaattaaataacttaaaacacctaagtgatatgcaaaaaaaataagaagattaatttattataattaaataacttaaaggacatatagtgtaatttaac 11017075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 26706207 - 26706274
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 394  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||||| |||||| | ||||||||||    
T  26706207 taagtagttttcgtaacacttaggttctttaagttatttaattgtaacttttaggcctcgaataactt 26706274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 469 - 564
Target Start/End: Complemental strand, 46530258 - 46530163
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    ||||||| | ||||||||| |||||||||||||||| |||||||||||| || |||| | |||||  | || ||| | |||| |||||||||||||    
T  46530258 ttaaagggcaaacttgttacaattaattaacttaaaagacctaagtggtgcgaaaaagaattaaagaaccagtttgtgacaattaaataacttaaa 46530163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 533
Target Start/End: Complemental strand, 48130268 - 48130213
Alignment:
Q  476 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 533  Q
    |||||||||||| |||||||||||||||| || |||||||||||  ||||||||||||    
T  48130268 accaacttgttacaattaattaacttaaatgatctaagtggtac--aaaaaacttaaa 48130213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 481 - 570
Target Start/End: Original strand, 48130428 - 48130516
Alignment:
Q  481 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 570  Q
    ||||||| || ||||||||||||| ||||||| |||||   | ||||||||||| |||||||| |||||| ||||||| ||||| |||||    
T  48130428 cttgttacaagtaattaacttaaaagacctaaatggtaaa-agaaaacttaaataatcaatttattacaattaaataatttaaaggactt 48130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 484 - 583
Target Start/End: Original strand, 363806 - 363906
Alignment:
Q  484 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag-acttatggtgtaattt 582  Q
    |||| ||||||  |||||||| ||| ||||   |||| |||| ||||||||||  |||||||||||| ||||||||||||||| || | |||||||||||    
T  363806 gttacaattaaacaacttaaatgacttaagcattacgaaaaatacttaaatgacaaatttcttacaattaaataacttaaaagaacatctggtgtaattt 363905  T
Q  583 a 583  Q
    |    
T  363906 a 363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 469 - 548
Target Start/End: Original strand, 26706353 - 26706432
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaactt-aaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 548  Q
    ||||||||| ||||||| ||||||||||||||| ||||||| ||| || |||| ||||||||||||  |||||||| ||||    
T  26706353 ttaaaggacaaacttgtaataattaattaacttaaaaggacttaaatgatacg-aaaaaacttaaagaatcaatttattac 26706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 481 - 583
Target Start/End: Original strand, 46530411 - 46530517
Alignment:
Q  481 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa---cttaaat-gatcaatttcttacaactaaataacttaaaagacttatggtg 576  Q
    ||||||| |||||||||||||||| ||| | ||||||||| ||||||   ||||||  || |||||| |||||| ||||||||| ||| ||| | |||||    
T  46530411 cttgttacaattaattaacttaaatgacgtgagtggtacgaaaaaaaaaacttaaaaagagcaatttgttacaaataaataactaaaatgacatctggtg 46530510  T
Q  577 taattta 583  Q
    |||||||    
T  46530511 taattta 46530517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 671
Target Start/End: Original strand, 2125101 - 2125168
Alignment:
Q  605 tttttgtatggttcttaactaaact-acaaaaatttctttaaatttataattttttcaaagtttgtta 671  Q
    |||| |||||||||||||||||| | || |  |||| ||||||||||||||||| |||||||||||||    
T  2125101 ttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgtta 2125168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 18470430 - 18470384
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaa 374  Q
    |||||||||||||||  |||||| || ||||||||||||||||||||    
T  18470430 taagtatttttcatacaacttagatcctttaagttatttaattgtaa 18470384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 533
Target Start/End: Original strand, 16026346 - 16026406
Alignment:
Q  472 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 533  Q
    |||||||||||||||| |||||| ||||||||||  | ||||| ||||| ||||||||||||    
T  16026346 aaggaccaacttgttacaattaagtaacttaaagagcgtaagttgtacg-aaaaaacttaaa 16026406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 533
Target Start/End: Original strand, 18470439 - 18470495
Alignment:
Q  476 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 533  Q
    |||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  18470439 accaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 18470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 461
Target Start/End: Original strand, 47600499 - 47600648
Alignment:
Q  313 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 411  Q
    ||||| ||||| || |||||||||||| |||  |||||||| ||  |||| |||||||||||| |||||| ||| ||| ||||  | |||||| ||||||    
T  47600499 aacaaattagtcatttaagtatttttcgtaatgcttaggtctttcgagttgtttaattgtaacttttaggacccaaattacttcaatttttaacatctga 47600598  T
Q  412 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 461  Q
    ||| || |||  | ||||  ||||||| |||| | |||| ||||||||||    
T  47600599 aataccacaaacttttacgattaaataacttaaatgaccaaattggtacg 47600648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 325 - 560
Target Start/End: Complemental strand, 30534666 - 30534432
Alignment:
Q  325 atgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactt-taggtcccgaataacttgcagttttaagatctgaaatccctcaatt 423  Q
    ||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||| |||| ||| |||||||| || ||||||||||| |||   ||||| |    
T  30534666 atgtaagtatttttcgtaagacttaggtcttttaaattatttaattgtaacttgtaggccccaaataacttacatttttaagatctaaaacatctcaaat 30534567  T
Q  424 tcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gta 522  Q
    | ||||||||||||| |||| | || ||| ||||||||        | || || |||||| ||| ||||||||||| |||| |||||||| |||||   |    
T  30534566 tgttacagttaaataactta-aagagctagttggtacggaaaaaacttaaagagcaactttttacaattaattaacataaa-gacctaagcggtacaaaa 30534469  T
Q  523 aaaaacttaaatgatcaatttcttacaactaaataact 560  Q
    ||||||||||| || |||||| |||||| |||||||||    
T  30534468 aaaaacttaaaagaccaattt-ttacaattaaataact 30534432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 328 - 564
Target Start/End: Original strand, 51265744 - 51265984
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 426  Q
    |||||||||||||||  |||||| || |||||||||||||||||||| ||| | | |  ||| |||||  | ||||||||||||||||| ||||| || |    
T  51265744 taagtatttttcatacaacttagatcctttaagttatttaattgtaaatttcaagccttgaaaaacttaaatttttaagatctgaaatctctcaaattgt 51265843  T
Q  427 tacagttaaatagcttagaggacctaattggtacgnnnnnnn---ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacg-ta 522  Q
    ||| |||||||| |||| | ||| ||| || ||||          ||||  ||||||||||||||| |||| |||||||||||| ||||| ||||||  |    
T  51265844 tacggttaaataacttaaaagac-taagtgatacgggaaaaaaacttaacagaccaacttgttatagttaaataacttaaaggatctaagaggtacgaaa 51265942  T
Q  523 aaaaacttaaatgatcaatttcttacaactaaataacttaaa 564  Q
    |||||| ||||||||||| || |||||| |||||||||||||    
T  51265943 aaaaacgtaaatgatcaacttattacaattaaataacttaaa 51265984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 376 - 533
Target Start/End: Complemental strand, 44291182 - 44291025
Alignment:
Q  376 tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaag 474  Q
    ||||||||||||||||||| || ||||||||||| |||||||  || || |||| |||||||| |||| || ||||  ||||||||        |||||     
T  44291182 tttaggtcccgaataacttacatttttaagatctaaaatccccaaaattgttacggttaaataacttaaag-accttgttggtacggaaaaaacttaaaa 44291084  T
Q  475 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 533  Q
    | ||||||||||| || ||||||||||||| ||| ||||||||||| ||||||||||||    
T  44291083 ggccaacttgttacaactaattaacttaaatgacttaagtggtacgaaaaaaacttaaa 44291025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 469 - 565
Target Start/End: Original strand, 44291413 - 44291509
Alignment:
Q  469 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 565  Q
    ||||||||| ||||||||| |||||| ||||||||||||| |||||| |||  |||||| ||| | || |||||| |||||| ||||||||||||||    
T  44291413 ttaaaggactaacttgttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaaa 44291509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 479 - 583
Target Start/End: Original strand, 48200367 - 48200471
Alignment:
Q  479 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 578  Q
    ||||| ||| ||| |||||| ||||| ||| |||| |||||| |||||| ||||||||||||||  |||||| ||||||| |||||||| || | |||||    
T  48200367 aacttattacaatcaattaatttaaaagacttaagcggtacgaaaaaaaattaaatgatcaattctttacaattaaataagttaaaagatttctagtgta 48200466  T
Q  579 attta 583  Q
    |||||    
T  48200467 attta 48200471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 533
Target Start/End: Complemental strand, 51265739 - 51265679
Alignment:
Q  472 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 533  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  51265739 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 51265679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
Q  252 gtatcacttacgtcatttaagttatttaattataacaagttagt 295  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  44291463 gtatcacttatgtcctttaagttatttaattgtaacaagttagt 44291420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 50898882 - 50898948
Alignment:
Q  328 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 394  Q
    |||||||||||| ||||||||||||  |||||||| |||||||||||| |||| ||| ||||||||||    
T  50898882 taagtatttttcgtaacacttaggt-atttaagttgtttaattgtaacttttacgtctcgaataactt 50898948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 583
Target Start/End: Original strand, 1662257 - 1662357
Alignment:
Q  482 ttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 581  Q
    |||||| ||||||||||| ||| ||| ||||||||||   |||||||||||| ||||||||| || ||| ||||||  ||||| ||| | || |||||||    
T  1662257 ttgttacaattaattaacataatggatctaagtggtata-aaaaaacttaaaagatcaatttattgcaattaaatactttaaaggacctctgatgtaatt 1662355  T
Q  582 ta 583  Q
    ||    
T  1662356 ta 1662357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University