View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7316_low_4 (Length: 742)
Name: NF7316_low_4
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 49 - 727
Target Start/End: Complemental strand, 38875666 - 38874989
Alignment:
| Q |
49 |
actgatacttaacaaaacatggagaaaatattttcgcagagnnnnnnnnnnnnnnnnnncataggactattgcttgttgtgaatnnnnnnnnnntcatga |
148 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
38875666 |
actgatacttaacaaaacatggagaaaatattttcgcagagaaaataaaaaataaaaaacatgggactattgcttgttgtgaataaaaaaaaa-tcatga |
38875568 |
T |
|
| Q |
149 |
tcatagtttaagaatgataagtaaatattatatagtttaataatgatatactatgtagcaccaattcttcacattgaagttgtgtccgacatgtgttggt |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38875567 |
tcatagtttaagaatgataagtaaatattatatagtttaataatgatatactatgtagcatcaattcttcacattgaagttgtgtccgacatgtgttggt |
38875468 |
T |
|
| Q |
249 |
gacatacatcgtcaagacaccgacacatttgattacattcctattttgctagattttacatccctatgaacaatagaaacaacactatcataatgcaaat |
348 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38875467 |
gacatatatcgtcaagacaccgacacatttgattacattcctattttgctagattttacatccctatgaacaataagaacaacactatcataatgcaaat |
38875368 |
T |
|
| Q |
349 |
aagaaagtcccccagcagcatcaacaacaattttaagtctagttggccaatccaacaaattcttcttgctactatgcaaagaagaatggttaggcattat |
448 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38875367 |
aagaaagtcccccagcagcatctacaacaattttaagtctagttagccaatccaacaaattcttcttgctactatgcaaagaagaatggttaggcattat |
38875268 |
T |
|
| Q |
449 |
agaggagcctaatcttagttaggcatggcaaagtacatatagnnnnnnngtaacaacaataaatctcgtcgtctacttcgcccctgaccctccacgacac |
548 |
Q |
| |
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| T |
38875267 |
agaggagcctaatcttagttaggcatggcaaagtacatatagtttttttgtaacaacaataaatctcgtcgtctacttcgcccctggccctccacgacac |
38875168 |
T |
|
| Q |
549 |
ttttctgctgtctcacagcctctttgatatgtgtttgccggtttctggttgcagctgcctggatcttttttgctgcatgtgatagtgtctctttccattg |
648 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
38875167 |
ttttcttctgtctcacagcctctttgatatgtgtttgtcggtttctggttgcagctgcctggatcttttttgctgcatgggatagtgtctctttgcattg |
38875068 |
T |
|
| Q |
649 |
caggattaccgataacattgccagcctcaacgtcttgagttacaaatgtgcaaatcaaaagagcactaaggaacacaac |
727 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38875067 |
caggattactgataacattgccagcctcaacgtcttgagttacaaatgtgcaaatcaaaagagcactaaggaacgcaac |
38874989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 143 - 727
Target Start/End: Complemental strand, 38872417 - 38871827
Alignment:
| Q |
143 |
tcatgatcatagtttaagaatgataagtaaatattatatagtttaataatgatatactatgtagcaccaattcttcacattgaagttgtgtccgacatgt |
242 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||||||| |
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| T |
38872417 |
tcatgatcatagtttaaga----taagtaaatattatatagtttaataatgatatactatgttgcatcatttcttcacattgatgttgtgtccgacatgt |
38872322 |
T |
|
| Q |
243 |
gttggtgacatacatcgtcaagacaccgacacatttgattacattcctattttgctagattttacatcc--------------ctatgaacaatagaaac |
328 |
Q |
| |
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|||||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||| ||| |
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| T |
38872321 |
gttggtgacatacatcatcaagaca-cgacatatttgattacatctctattttgctagattctacatccctatgattcataggctatgaacaataggaac |
38872223 |
T |
|
| Q |
329 |
aacactatcataatgcaaataagaaagtcccccagcagcatcaacaacaattttaagtctagttggccaatccaacaaattcttcttgctactatgcaaa |
428 |
Q |
| |
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||||| ||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||||| |
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| T |
38872222 |
aacacaatcatgatgcaaataagaaagtccctcaacagcatcaacagcaattttaagtctagtt-gtcaatccaacaaattcttcttgttactatgcact |
38872124 |
T |
|
| Q |
429 |
gaagaatggttaggcattatagaggagcctaatcttagttaggcatggcaaagtacatatagnnnnnnngtaacaacaataaatctcgtcg---tctact |
525 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||| |||||| || ||||||||||||||||||| |||||| |
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| T |
38872123 |
gaagaatggttgggcattataacggagcctaatcttagttcggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtcatctact |
38872024 |
T |
|
| Q |
526 |
tcgcccctgaccctccacgacacttttctgctgtctcacagcctctttgatatgtgtttgccggtttctggttgcagctgcctggatcttttttgctgca |
625 |
Q |
| |
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|| | |||||| || ||| ||||| || ||||||| ||||| | |||||||||||||| | |||| ||||||||||||| | || || || | |
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| T |
38872023 |
tc------gtccctccgcggcacctttcttctctctcacatcctctcttatatgtgtttgccgaaaccgggttacagctgcctggatttcttctgttgta |
38871930 |
T |
|
| Q |
626 |
tgtgatagtgtctctttccattgcaggattaccgataacattgccagcctcaacgtcttgagttacaaatgtgcaaatc-aaaagagcactaaggaacac |
724 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| |||| ||||||| || |||||||||| || |||| ||||| |||||||||||||||||||| |
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| T |
38871929 |
tgggatagtgtctctttgcattgcaggattaccgataaaattgacagcctcgacatcttgagttaaaagtgtggaaatcaaaaagagcactaaggaacac |
38871830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 297 - 427
Target Start/End: Complemental strand, 38868345 - 38868215
Alignment:
| Q |
297 |
ctagattttacatccctatgaacaatagaaacaacactatcataatgcaaataagaaagtcccccagcagcatcaacaacaattttaagtctagttggcc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
38868345 |
ctagattttacatccctatgaacaataggaacaacacaatcatggtgcaaataagaaagtccctcagcagcatcaacagcaattttaagtcttgttggcc |
38868246 |
T |
|
| Q |
397 |
aatccaacaaattcttcttgctactatgcaa |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
38868245 |
aatccaacaaattcttcttgctactatgcaa |
38868215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 443 - 727
Target Start/End: Original strand, 38782527 - 38782827
Alignment:
| Q |
443 |
cattatagaggagcctaatcttagttaggcatggcaaagtacatatagnnnnnnng-------taacaacaataaatc---tcgtcgtctacttcgcccc |
532 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| | |
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| T |
38782527 |
cattatagcggagcctaatcttagttaggcatgacaaagtacatatagttagcctaatctccataacaacaataaatcccgtcgtcgtctacttcgcctc |
38782626 |
T |
|
| Q |
533 |
tgac---cctccacg---acacttttctgctgtctcacagcctctttgatatgtgtttgccggtttctggttgcagctgcctggatcttttttgctgcat |
626 |
Q |
| |
|
|| | |||||||| |||||| ||| || ||||||| ||||| |||||||||||||||| |||||||||||||||||| | || || ||||| |
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|
| T |
38782627 |
tggcgtccctccacggacacacttgtcttctatctcacatcctctctgatatgtgtttgccgaaactgggttgcagctgcctggatttcttctgttgcat |
38782726 |
T |
|
| Q |
627 |
gtgatagtgtctctttccattgcaggattaccgataacattgccagcctcaacgtcttgagttacaaatgtgcaaatcaaaagagcactaaggaacacaa |
726 |
Q |
| |
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| |||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||||| | || |||||||||||||||||||||||| ||||||| |
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|
| T |
38782727 |
gggatagtgtctctttgcattgcaggattaccgataatattgacagcctcaacatcttgagtaaaaagtgtgcaaatcaaaagagcactaagaaacacaa |
38782826 |
T |
|
| Q |
727 |
c |
727 |
Q |
| |
|
| |
|
|
| T |
38782827 |
c |
38782827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 443 - 531
Target Start/End: Original strand, 38786150 - 38786238
Alignment:
| Q |
443 |
cattatagaggagcctaatcttagttaggcatggcaaagtacatatagnnnnnnngtaacaacaataaatctcgtcgtctacttcgccc |
531 |
Q |
| |
|
||||| || |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
38786150 |
cattacagcggagcctaatcttaattaggcatgacaaagtacatatagtttttctataacaacaataaatcccgtcgtctactttgccc |
38786238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 38869219 - 38869168
Alignment:
| Q |
151 |
atagtttaagaatgataagtaaatattatatagtttaataatgatatactat |
202 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
38869219 |
atagtttaagaatgttaagtaaatataatatagtttaatgatgatagactat |
38869168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 38778189 - 38778234
Alignment:
| Q |
443 |
cattatagaggagcctaatcttagttaggcatggcaaagtacatat |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38778189 |
cattatagaggagcctaatcttagttaggcatgatcaagtacatat |
38778234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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