View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7316_low_5 (Length: 678)
Name: NF7316_low_5
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_low_5 |
 | |
|
| [»] scaffold0425 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 36)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 18 - 666
Target Start/End: Original strand, 5250460 - 5251117
Alignment:
| Q |
18 |
atttcttacctgttagtctctgccacagttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgag |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250460 |
atttcttacctgttagtctctgccgcagttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgag |
5250559 |
T |
|
| Q |
118 |
tccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5250560 |
tccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtc |
5250659 |
T |
|
| Q |
218 |
ttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5250660 |
ttacccattccaccgagacccactatgctgattattggtacatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccat |
5250759 |
T |
|
| Q |
318 |
ctctaccatatatgctcaattcatccaccaaagatgtagttggcaatctatctaagggtttccaaataactccaccttcactactag---------catg |
408 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
5250760 |
ctctaccatatatgctcgattcatccaccaaagctgtagttggaaatctatctaagggtttccaactaacgccaccttcactactagcaaaagcctcatg |
5250859 |
T |
|
| Q |
409 |
tttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaag |
508 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5250860 |
tttcaatccgagcatatccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaaagaag |
5250959 |
T |
|
| Q |
509 |
tcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcat |
608 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250960 |
tcgaataccttgctagtagaaggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcat |
5251059 |
T |
|
| Q |
609 |
aatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttcatctc |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5251060 |
aatgtttaagatcatcaagccacttcttcacgtacatgctttggtattgcttcatctc |
5251117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 666
Target Start/End: Original strand, 5268347 - 5269004
Alignment:
| Q |
18 |
atttcttacctgttagtctctgccacagttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgag |
117 |
Q |
| |
|
||||||| |||||||||| |||| || |||| |||||||| ||| || |||||| |||||| |||| ||| |||||| |||| ||||||||| || || |
|
|
| T |
5268347 |
atttcttgcctgttagtccctgctgcaactgatgttggagtaaattcaagtcttcaccatctgctgaaaagtcaaatgacctcagaattgctttagtaag |
5268446 |
T |
|
| Q |
118 |
tccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtc |
217 |
Q |
| |
|
||| | | |||||||| |||| |||||||||||||| |||||| ||| ||||| ||||| ||||| ||||| |||||||| || |||||||| |||||| |
|
|
| T |
5268447 |
tccgagaccatcaaaaatttccgaaacatagacccaggctttatgtttaaaattctccttgatcctttggtcattgtacacgagttgagcaagggtggtc |
5268546 |
T |
|
| Q |
218 |
ttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5268547 |
ttacccattccaccgagacccactatgctgattattggtacatggttgcccttgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccat |
5268646 |
T |
|
| Q |
318 |
ctctaccatatatgctcaattcatccaccaaagatgtagttggcaatctatctaagggtttccaaataactccaccttcactactagca---------tg |
408 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
5268647 |
ctctaccatatatgctggattcatccaccaaagatgtagttggcaatctatctaagggtttccaactaactccaccttcactactagcacaagcgtcttg |
5268746 |
T |
|
| Q |
409 |
tttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaag |
508 |
Q |
| |
|
||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
5268747 |
ttttaatccaagcatatgcttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagtgaaagacgaaatgaag |
5268846 |
T |
|
| Q |
509 |
tcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcat |
608 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5268847 |
tcgaataccttgctagtagaaggttgagattcaagtttctgcttcttcaatggtgtatcagttgcaatctcatctaacagctggtcaacctcatatgcat |
5268946 |
T |
|
| Q |
609 |
aatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttcatctc |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5268947 |
aatgtttaagatcatcaagccacttcttcacgtacatgctttggaactgcttcatctc |
5269004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 666
Target Start/End: Complemental strand, 4388675 - 4388024
Alignment:
| Q |
18 |
atttcttacctgttagtctctgccacagttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgag |
117 |
Q |
| |
|
|||||||||| |||||| | ||| || ||||| |||||| ||||| ||||||||||||| |||||||||||||||||| |||| |||||||||||| || |
|
|
| T |
4388675 |
atttcttaccagttagtttgtgctgcaattgatgttggagcagattaaactcttcagcatgtgttgaagagtgaaatgacctcagaattgctttggtaag |
4388576 |
T |
|
| Q |
118 |
tccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
4388575 |
tccaacaacatcaaaagtttctgaaacgtagacccaagctttaagttcaaaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtc |
4388476 |
T |
|
| Q |
218 |
ttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||| | |
|
|
| T |
4388475 |
ttacccattccaccgagacccactatgctgattattggtacttggttgccgctgtctatgtcagacagtaaaaagttgactaactcctctttgtcaccgt |
4388376 |
T |
|
| Q |
318 |
ctctaccatatatgctcaattcatccaccaaagatgtagttggcaatc-tatctaagggtttccaaataactccaccttcactactagca---------t |
407 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| |||| |||| |||||||||||| | | ||||||||||||||||||| | |
|
|
| T |
4388375 |
ttctaccatatatgctcgatccatccaccaaagatgtagttggaaatcttatc-aagggtttccaactgagtccaccttcactactagcacaggtgtctt |
4388277 |
T |
|
| Q |
408 |
gtttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaa |
507 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||||| | |||||||||||||||| | |||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
4388276 |
gtttcagtccgagcatatccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggattaatgaaagatgaaaagaa |
4388177 |
T |
|
| Q |
508 |
gtcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgca |
607 |
Q |
| |
|
|| |||||||||||||||||| || |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388176 |
gttgaataccttgctagtaga------aggttcaaatttctgcttcttcaatggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgca |
4388083 |
T |
|
| Q |
608 |
taatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttcatctc |
666 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4388082 |
ttatgtttaagatcatcaagccacttcttcacggacatgctttggtactgcttcatctc |
4388024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 660
Target Start/End: Original strand, 5299022 - 5299673
Alignment:
| Q |
18 |
atttcttacctgttagtctctgccacagttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgag |
117 |
Q |
| |
|
||||||| ||||||||||||||| || ||||| |||||||||||| || |||||| |||||| |||||||||||||| | | |||||||||||| || |
|
|
| T |
5299022 |
atttctttcctgttagtctctgctgcaattgatgttggagtagattcaagtcttcaccatctgccgaagagtgaaatgaccgtaaaattgctttggtaag |
5299121 |
T |
|
| Q |
118 |
tccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtc |
217 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| ||||| |||||||| || | ||| ||| ||| || ||||||||||| |||||||| ||||| |
|
|
| T |
5299122 |
tccaacaacattaaaagtttccgaaacatagacccaggcttttagttcaaactgtttctgtatcatgttgttattgtacacaagttgagcaagggtggtt |
5299221 |
T |
|
| Q |
218 |
ttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccat |
317 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||| || |||||||| ||| ||| ||||| |||||||||| |
|
|
| T |
5299222 |
tttcccattccacctagacccactatgctgattattggtacacggtcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccat |
5299321 |
T |
|
| Q |
318 |
ctctaccatatatgctcaattcatccaccaaagatgtagttggcaatctatctaagggtttccaaataactccaccttcactactagca---------tg |
408 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| |||||||||| | ||| | ||||||| ||| |||||||| |||||||| || |
|
|
| T |
5299322 |
ctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcacaaatttcttg |
5299421 |
T |
|
| Q |
409 |
tttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaag |
508 |
Q |
| |
|
||| || || | |||||||||||||||||| |||||||| | |||||||||||||||| | |||||||||||||| |||| ||| | |||||||||||| |
|
|
| T |
5299422 |
ttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtacacgatgaaaagaag |
5299521 |
T |
|
| Q |
509 |
tcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcat |
608 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| ||||||||||||| ||||| | |||||||||||||| || || || || | ||||| || |
|
|
| T |
5299522 |
tcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaa |
5299621 |
T |
|
| Q |
609 |
aatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgctt |
660 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
5299622 |
catgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctt |
5299673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 44 - 345
Target Start/End: Original strand, 8454971 - 8455272
Alignment:
| Q |
44 |
agttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaa |
143 |
Q |
| |
|
||||||| |||||||||||| || |||||| |||||| |||||| | ||| || | | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8454971 |
agttgatgttggagtagatttaagtcttcaccatctgctgaagaattaaacgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaa |
8455070 |
T |
|
| Q |
144 |
catagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactat |
243 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||| |||||||| || || | ||| ||||| |
|
|
| T |
8455071 |
catagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccctcctaaaccgactat |
8455170 |
T |
|
| Q |
244 |
gctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatcc |
343 |
Q |
| |
|
|||||||||||| || ||||||||||| || || | | |||||||| |||||||| | ||||| ||| |||||| ||||||||||||| | |||||| |
|
|
| T |
8455171 |
gctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattaatttttccttatcaacatctcgaccatatatgctcgactcatcc |
8455270 |
T |
|
| Q |
344 |
ac |
345 |
Q |
| |
|
|| |
|
|
| T |
8455271 |
ac |
8455272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 44 - 331
Target Start/End: Original strand, 6947586 - 6947873
Alignment:
| Q |
44 |
agttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaa |
143 |
Q |
| |
|
||||||| |||||||||||| || |||||| |||||| |||||| | |||||| | | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6947586 |
agttgatgttggagtagattcaagtcttcaccatctgctgaagaattaaatgacttgagaattgctttggtgagtccaacaacatcaaaagattctgaaa |
6947685 |
T |
|
| Q |
144 |
catagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactat |
243 |
Q |
| |
|
| |||||||| | |||||| ||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||| || ||||| || || | ||||||||| |
|
|
| T |
6947686 |
cgtagacccatgttttaaggtcaaaatgctcctctatcttgttgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaacccactat |
6947785 |
T |
|
| Q |
244 |
gctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
331 |
Q |
| |
|
|||||||||||| || |||||||||||||| || | | |||||||| |||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
6947786 |
gctgattattggaacctggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatatg |
6947873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 8590020 - 8590347
Alignment:
| Q |
18 |
atttcttacctgttagtctctgccacagttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgag |
117 |
Q |
| |
|
||||||| ||||||||| | ||| || ||||| |||||||||||| || |||||| |||||| |||||| | |||||| | ||||||||||||||||| |
|
|
| T |
8590020 |
atttcttgcctgttagtatgtgctgcaattgatgttggagtagattcaagtcttcaccatctgctgaagaattaaatgaattgataattgctttggtgag |
8590119 |
T |
|
| Q |
118 |
tccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtc |
217 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||| | ||| ||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
8590120 |
tccaacaacatcaaaagattcagaaacatagacccatgctttaagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggtt |
8590219 |
T |
|
| Q |
218 |
ttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccat |
317 |
Q |
| |
|
|| ||||| || || | ||| ||||||||||||||||| || |||||||||| || || | | |||||||| ||||||| | | ||| ||| ||| |
|
|
| T |
8590220 |
ttccccatccctcctaaaccgactatgctgattattggaacgcggttgccactatcattgcctgcaagtaaaaacttgattagttttttcttatcaacat |
8590319 |
T |
|
| Q |
318 |
ctctaccatatatgctcaattcatccac |
345 |
Q |
| |
|
||||||||||||||||| | |||||||| |
|
|
| T |
8590320 |
ctctaccatatatgctcgactcatccac |
8590347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 43 - 252
Target Start/End: Complemental strand, 6448495 - 6448286
Alignment:
| Q |
43 |
cagttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaa |
142 |
Q |
| |
|
||||| || |||||||||||| || |||||| |||||| |||||| | |||||| | | |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6448495 |
cagttcatgttggagtagattcaagtcttcaccatctgctgaagaattaaatgactttaggattgctttggtgagtccaacaacatcaaaatattctgaa |
6448396 |
T |
|
| Q |
143 |
acatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccacta |
242 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||||| ||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
6448395 |
acatagacccaagatttaagttcaaaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatcccacccagacccacta |
6448296 |
T |
|
| Q |
243 |
tgctgattat |
252 |
Q |
| |
|
|||||||||| |
|
|
| T |
6448295 |
tgctgattat |
6448286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 44 - 333
Target Start/End: Original strand, 6736307 - 6736596
Alignment:
| Q |
44 |
agttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaa |
143 |
Q |
| |
|
||||||| ||||||| |||| || |||||| |||||| ||||| | |||||| | | |||||||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
6736307 |
agttgatgttggagttgattcaagtcttcaccatctgctgaaggattaaatgacttgagaattgctttggtgagtccaaaaacatcgaaagattctgaaa |
6736406 |
T |
|
| Q |
144 |
catagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactat |
243 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || || | ||||||||| |
|
|
| T |
6736407 |
catagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactat |
6736506 |
T |
|
| Q |
244 |
gctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgct |
333 |
Q |
| |
|
||| |||||||| || |||||||||||||| || | | |||||||| ||||||| | ||||| ||| ||||||||||||||||||| |
|
|
| T |
6736507 |
gctaattattggaacctggttgccactgtcattgcctgtaagtaaaaacttgattagtttttccttatcatcatctctaccatatatgct |
6736596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 103 - 333
Target Start/End: Complemental strand, 6554091 - 6553861
Alignment:
| Q |
103 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
202 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||| || ||| ||| |||||||||||||||| |
|
|
| T |
6554091 |
aattgctttggtgagtccaaaaacatcgaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagc |
6553992 |
T |
|
| Q |
203 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaact |
302 |
Q |
| |
|
| |||||| ||||| || ||||| || || | ||||||||||||||||||||| || ||||||||| ||| || | |||||||| |||||||| | |
|
|
| T |
6553991 |
ttagcaagggtggttttccccatccctcctaaacccactatgctgattattggaacccggttgccaccgtcattgccttcaagtaaaaacttgattaatt |
6553892 |
T |
|
| Q |
303 |
cctccttgtcaccatctctaccatatatgct |
333 |
Q |
| |
|
||||| ||| |||| |||||||||||||| |
|
|
| T |
6553891 |
tttccttatcaacatccctaccatatatgct |
6553861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 103 - 333
Target Start/End: Complemental strand, 6479635 - 6479405
Alignment:
| Q |
103 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||| ||| ||| || ||||||||||||| |
|
|
| T |
6479635 |
aattgctttggtgagtccaacaacatcataagattctgaaacatagacccatgctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagc |
6479536 |
T |
|
| Q |
203 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaact |
302 |
Q |
| |
|
| |||||| ||||| || ||||| || || | ||| |||||||||||||| || || ||| | |||||||| || | | |||||||| ||||| | | |
|
|
| T |
6479535 |
ttagcaagggtggttttccccatccctcctaaaccaactatgctgattatcggaacctgggttccactgtcattgcctgcaagtaaaaatttgataagtt |
6479436 |
T |
|
| Q |
303 |
cctccttgtcaccatctctaccatatatgct |
333 |
Q |
| |
|
| ||||||||| ||||||| ||||||||||| |
|
|
| T |
6479435 |
cttccttgtcaacatctctgccatatatgct |
6479405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 89 - 366
Target Start/End: Complemental strand, 8568615 - 8568338
Alignment:
| Q |
89 |
tgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggt |
188 |
Q |
| |
|
|||||||| || | ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| || ||| |||||| |
|
|
| T |
8568615 |
tgaaatgacctgagaattgttttggtgagtccaacaacatcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctatcttgtggt |
8568516 |
T |
|
| Q |
189 |
cgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaa |
288 |
Q |
| |
|
| ||||| ||||| ||||||| |||||||||||||| ||||| |||||||| || || |||| ||||||||||||| || |||| | || || |
|
|
| T |
8568515 |
cattgtagacaagtcgagcaagggtggtcttacccatcccacctagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaa |
8568416 |
T |
|
| Q |
289 |
aaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatgtagttggcaatct |
366 |
Q |
| |
|
| ||||||||| | | || ||| |||||||||||||||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
8568415 |
ataattgattattttatttttatcatcatctctaccatatatgcaagattcatccaccaaagacgcagttggcaatct |
8568338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 103 - 271
Target Start/End: Complemental strand, 6519815 - 6519647
Alignment:
| Q |
103 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| || || ||| ||| ||||| ||| | |
|
|
| T |
6519815 |
aattgctttggtgagtccaacatcatcaaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgt |
6519716 |
T |
|
| Q |
203 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactg |
271 |
Q |
| |
|
|||||||| ||||| ||||||||||| || | ||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
6519715 |
tgagcaagggtggttttacccattcctcctaaacccactatgctgattattggaacctggttaccactg |
6519647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 124 - 352
Target Start/End: Complemental strand, 6721695 - 6721467
Alignment:
| Q |
124 |
aacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttaccc |
223 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||| | |||||| ||||||||||| ||||| |||||||| ||||| || |||||||| |
|
|
| T |
6721695 |
aacatcaaaagattctgaaagatagacccaagctttaagttcatattgctccactatcctgtggtcattgtaaacaagctgggcaagggttgtcttacct |
6721596 |
T |
|
| Q |
224 |
attccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctac |
323 |
Q |
| |
|
|| ||| ||||||||||| |||||||| || || |||||| ||||||| | ||||| || || |||||||||| || || || ||| |||| || |
|
|
| T |
6721595 |
atcccaatcagacccactatactgattatgggcacctggttgtcactgtcactatcagaaagcaagaaattgattatttcttctttctcatgctctcgac |
6721496 |
T |
|
| Q |
324 |
catatatgctcaattcatccaccaaagat |
352 |
Q |
| |
|
|||||||| | ||||||||||||||||| |
|
|
| T |
6721495 |
catatatgaccgattcatccaccaaagat |
6721467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 409 - 588
Target Start/End: Complemental strand, 6448120 - 6447941
Alignment:
| Q |
409 |
tttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaag |
508 |
Q |
| |
|
||||||| | |||| ||||||||||| ||||||| | || || |||| |||||| ||| | |||||||| ||||||||||| | | || || || |||| |
|
|
| T |
6448120 |
tttcaattccagcacatccttttgctctgcaagataatctagattctttagcaagtctttgatcctagattcaaatggattggcaagagttggaatgaag |
6448021 |
T |
|
| Q |
509 |
tcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacag |
588 |
Q |
| |
|
| ||| | ||||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6448020 |
ttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcactggtgcatcagttgcaatctcatctaacag |
6447941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 121 - 331
Target Start/End: Complemental strand, 6590963 - 6590753
Alignment:
| Q |
121 |
aacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtctta |
220 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||||||| |||||| | ||| ||||||| ||||| |||||| | ||||| || |||||| |
|
|
| T |
6590963 |
aacaagatcaaaagattttgaaacatagacccaagctttaagttcaaattgctccagtatcttgtggtccttgtaaacaagccgggcaagggttgtctta |
6590864 |
T |
|
| Q |
221 |
cccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctc |
320 |
Q |
| |
|
||||| ||| | ||||||||| | |||||| |||||||||||| ||||| |||| || |||||||| || |||| ||||| || ||| |||| |
|
|
| T |
6590863 |
cccatcccaatcatacccactatacagattatgggtacatggttgtgactgtgactgtctgaaagtaaaaatttaattatttcctctttctcatgctctc |
6590764 |
T |
|
| Q |
321 |
taccatatatg |
331 |
Q |
| |
|
||||||||||| |
|
|
| T |
6590763 |
taccatatatg |
6590753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 109 - 366
Target Start/End: Original strand, 8471943 - 8472200
Alignment:
| Q |
109 |
tttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagca |
208 |
Q |
| |
|
|||||| ||| ||| |||||||||| || || |||| ||||||| ||||||||||||| |||| | |||||| ||||| ||||| |||||||||||| |
|
|
| T |
8471943 |
tttggtaagtgcaataacatcaaaatactcagatacatggacccaaactttaagttcaaactgcttgtccatcctctggtcattgtagacaagctgagca |
8472042 |
T |
|
| Q |
209 |
agagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctcct |
308 |
Q |
| |
|
|| |||||||| ||||| ||| | ||||||||||||||| ||| ||| ||||||||| |||| ||| ||| || ||| | |||||||| || || | |
|
|
| T |
8472043 |
agggtggtcttccccatcccaggcaaacccactatgctgatagttgatacttggttgccattgtcgttgtaagaaagcaaatacttgattaattcttctt |
8472142 |
T |
|
| Q |
309 |
tgtcaccatctctaccatatatgctcaattcatccaccaaagatgtagttggcaatct |
366 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||| ||||||| ||||||| |||| |
|
|
| T |
8472143 |
tgtcaccttctctaccacgtatggaagattcatccactaaagatgcagttggcgatct |
8472200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 7750403 - 7750559
Alignment:
| Q |
103 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
202 |
Q |
| |
|
|||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||| ||||| |
|
|
| T |
7750403 |
aattgcttgggtgagatgaacaagatcaaaagattctgaaacatagacccaagctttaagttcaaattgctcatgtatcttgtggtcgttgtaaacaagt |
7750502 |
T |
|
| Q |
203 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtaca |
259 |
Q |
| |
|
| |||| || ||||||||||| ||| | ||||||||| |||||||| |||||| |
|
|
| T |
7750503 |
cgggcaatggttgtcttacccatcccaatcacacccactatactgattatgggtaca |
7750559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 5281065 - 5281208
Alignment:
| Q |
108 |
ctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagc |
207 |
Q |
| |
|
||||||| | || |||| |||||||| ||||||||||||||||||||||||| ||||||||||||| | || || | |||||| |||||||||| ||| |
|
|
| T |
5281065 |
ctttggtaattcgaacagcatcaaaaaattctgaaacatagacccaagctttatgttcaaaatgctctttaattctatcgtcgttatacacaagctcagc |
5281164 |
T |
|
| Q |
208 |
aagagtggtcttacccattccaccgagacccactatgctgatta |
251 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||||| |||||| |
|
|
| T |
5281165 |
aagggtggtcttacccatcccaccagaacccactatggtgatta |
5281208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 129 - 258
Target Start/End: Complemental strand, 13270215 - 13270086
Alignment:
| Q |
129 |
caaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattcc |
228 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||||||||| | ||||||||||| || |
|
|
| T |
13270215 |
caaaagattctggaacatagacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaagggctgtcttacccatccc |
13270116 |
T |
|
| Q |
229 |
accgagacccactatgctgattattggtac |
258 |
Q |
| |
|
||||||||||| |||||||| ||||| |
|
|
| T |
13270115 |
catcagacccactatactgattatgggtac |
13270086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 121 - 306
Target Start/End: Original strand, 6882926 - 6883111
Alignment:
| Q |
121 |
aacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtctta |
220 |
Q |
| |
|
||||| || ||||| ||||| ||||| ||||||||||||||||||||||||||| ||| ||| ||| ||||| |||||||| || ||||| |||||| |
|
|
| T |
6882926 |
aacaagattaaaagattctggaacattcacccaagctttaagttcaaaatgctccgtgatcatgtcgtcattgtaaacaagctgggcgagagttgtctta |
6883025 |
T |
|
| Q |
221 |
cccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctc |
306 |
Q |
| |
|
||||| || ||||||||||| || ||||| ||| || ||||| |||||| |||||||| |||||||| || ||||| ||||| |
|
|
| T |
6883026 |
cccatccccatcagacccactatactaattatgggtgcaaggttgtcactgtgaatgtcagaaagtaaaaatttaattaattcctc |
6883111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 130 - 257
Target Start/End: Original strand, 6266122 - 6266249
Alignment:
| Q |
130 |
aaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattcca |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | |||||||| || || |
|
|
| T |
6266122 |
aaaagtttctgaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttaccaatcccc |
6266221 |
T |
|
| Q |
230 |
ccgagacccactatgctgattattggta |
257 |
Q |
| |
|
||||||||||| |||||||| |||| |
|
|
| T |
6266222 |
gtcagacccactatactgattatgggta |
6266249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 535 - 658
Target Start/End: Original strand, 5281471 - 5281594
Alignment:
| Q |
535 |
agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc |
634 |
Q |
| |
|
||||||| |||||||||| |||||| |||| ||||| ||||||||||| || | ||||| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
5281471 |
agattcatctttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttc |
5281570 |
T |
|
| Q |
635 |
ttcacgtacatgctttggtactgc |
658 |
Q |
| |
|
|| || || |||||| ||||||| |
|
|
| T |
5281571 |
tttacatatgtgcttttgtactgc |
5281594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 140 - 331
Target Start/End: Original strand, 6259595 - 6259786
Alignment:
| Q |
140 |
gaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagaccca |
239 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | ||||||||||| || ||||||| |
|
|
| T |
6259595 |
gaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttacccatccccgtcagaccca |
6259694 |
T |
|
| Q |
240 |
ctatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
331 |
Q |
| |
|
|||| |||||||| | ||| ||||| | ||| |||| || |||||||| ||||||| ||||| || |||| ||||||||||||||| |
|
|
| T |
6259695 |
ctatactgattatggatacctggtttcggttgtaactgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatg |
6259786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 562 - 670
Target Start/End: Complemental strand, 6553620 - 6553512
Alignment:
| Q |
562 |
tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttc |
661 |
Q |
| |
|
||||||||| | |||||||||||| || ||||| ||||||| || ||||||||| |||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
6553620 |
tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt |
6553521 |
T |
|
| Q |
662 |
atctctgct |
670 |
Q |
| |
|
||||||||| |
|
|
| T |
6553520 |
atctctgct |
6553512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 121 - 273
Target Start/End: Original strand, 6900510 - 6900662
Alignment:
| Q |
121 |
aacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtctta |
220 |
Q |
| |
|
||||| |||||||| ||| ||||||| |||||||||||||| ||||||||||||| ||| ||| ||| | ||| |||||||| || || || |||||| |
|
|
| T |
6900510 |
aacaagatcaaaagattccgaaacatggacccaagctttaatttcaaaatgctccacgatcatgtcgtcatagtaaacaagctgggcgagggttgtctta |
6900609 |
T |
|
| Q |
221 |
cccattccaccgagacccactatgctgattattggtacatggttgccactgtc |
273 |
Q |
| |
|
||||| ||| | |||||||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
6900610 |
cccatcccaatcacacccactacactgattatgggtacttggttgcgactgtc |
6900662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 639
Target Start/End: Original strand, 6948089 - 6948193
Alignment:
| Q |
535 |
agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc |
634 |
Q |
| |
|
|||||||||||||||||| || || ||||||||| | ||||||||||||||| ||||| ||||||| || ||||||||| ||||||||||||||| |
|
|
| T |
6948089 |
agattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtctgcctcatagacaacatgtttaagttcatcaagccacttc |
6948188 |
T |
|
| Q |
635 |
ttcac |
639 |
Q |
| |
|
||||| |
|
|
| T |
6948189 |
ttcac |
6948193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 562 - 670
Target Start/End: Original strand, 8455501 - 8455609
Alignment:
| Q |
562 |
tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttc |
661 |
Q |
| |
|
||||||||| | |||||||||||| || ||||| | ||||| || |||||||||||||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
8455501 |
tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgcttt |
8455600 |
T |
|
| Q |
662 |
atctctgct |
670 |
Q |
| |
|
||||||||| |
|
|
| T |
8455601 |
atctctgct |
8455609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 535 - 670
Target Start/End: Complemental strand, 6479191 - 6479056
Alignment:
| Q |
535 |
agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc |
634 |
Q |
| |
|
|||||||||||||||||| || || ||||||||| | ||||||||||| || ||||| | ||||| || ||||||||| | ||||||||||||| |
|
|
| T |
6479191 |
agattcagctttcagcttatttagcattgcatcagtagatatctcatctaatagttggtctgcttcataaacaacatgtttaagtttatcaagccacttc |
6479092 |
T |
|
| Q |
635 |
ttcacgtacatgctttggtactgcttcatctctgct |
670 |
Q |
| |
|
||||| || ||| ||||||||||||| ||||||||| |
|
|
| T |
6479091 |
ttcacatatatgatttggtactgctttatctctgct |
6479056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 360
Target Start/End: Complemental strand, 6838548 - 6838297
Alignment:
| Q |
109 |
tttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagca |
208 |
Q |
| |
|
|||||| ||||||| |||||||||| | || |||| |||||||||||||| ||||| | ||| || || ||| || ||||| |||||||||||| |
|
|
| T |
6838548 |
tttggtaagtccaataacatcaaaatacttagatacatggacccaagctttaatctcaaacttctcttgtattctgcaatcattgtagacaagctgagca |
6838449 |
T |
|
| Q |
209 |
agagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctcct |
308 |
Q |
| |
|
|| |||||||| ||||| ||||| | ||| ||||||||||| ||| ||| ||||||||| |||| ||| |||||| ||| | || |||| || || | |
|
|
| T |
6838448 |
agggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtaagacagcaaatagttaattatttcttctt |
6838349 |
T |
|
| Q |
309 |
tgtcaccatctctaccatatatgctcaattcatccaccaaagatgtagttgg |
360 |
Q |
| |
|
| ||||| ||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
6838348 |
tttcaccttctctaccacgtatggaagattcatccaccaaagatgcagttgg |
6838297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 258
Target Start/End: Original strand, 6917502 - 6917657
Alignment:
| Q |
103 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
202 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||| ||||||| ||| |||||||||||||||||| | ||||||| |||| | || || ||||| ||||| |
|
|
| T |
6917502 |
aattgatttggtgagaccaacaagatcaaaagattctgaatcatggacccaagctttaagttccacatgctccatcatcttatgatcattgtaaacaagt |
6917601 |
T |
|
| Q |
203 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtac |
258 |
Q |
| |
|
|| ||||| || || ||||| || ||| ||||| ||||| |||||||| ||||| |
|
|
| T |
6917602 |
tgcgcaagggtcgtattacctatcccaataagaccaactatactgattatgggtac |
6917657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 535 - 670
Target Start/End: Original strand, 8590549 - 8590684
Alignment:
| Q |
535 |
agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc |
634 |
Q |
| |
|
||||| |||||||||||| || || ||||||||| | |||||||||||| || ||||| | ||||| || ||||||||| ||||||||||||||| |
|
|
| T |
8590549 |
agatttagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttc |
8590648 |
T |
|
| Q |
635 |
ttcacgtacatgctttggtactgcttcatctctgct |
670 |
Q |
| |
|
||||| || ||||| |||||||||| ||||||||| |
|
|
| T |
8590649 |
ttcacatatttgcttcggtactgctttatctctgct |
8590684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 112 - 258
Target Start/End: Original strand, 6142696 - 6142842
Alignment:
| Q |
112 |
ggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaaga |
211 |
Q |
| |
|
|||||| | ||||| |||||||| | || ||||| ||||||||| ||||||||||| |||||||| ||||||||||| ||||| | || ||| ||||| |
|
|
| T |
6142696 |
ggtgagactaacaagatcaaaagatcttggaacatggacccaagcattaagttcaaattgctcctgtatcctgtggtcattgtaaataaactgcgcaagg |
6142795 |
T |
|
| Q |
212 |
gtggtcttacccattccaccgagacccactatgctgattattggtac |
258 |
Q |
| |
|
|| |||||||| || ||| ||||| ||||| |||||||| ||||| |
|
|
| T |
6142796 |
gttgtcttacctatcccaggaagacctactatactgattatgggtac |
6142842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 562 - 670
Target Start/End: Complemental strand, 6519344 - 6519236
Alignment:
| Q |
562 |
tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttc |
661 |
Q |
| |
|
||||||||| | |||||||||||| || ||||| | ||||| || ||||||||| |||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
6519344 |
tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttc |
6519245 |
T |
|
| Q |
662 |
atctctgct |
670 |
Q |
| |
|
| ||||||| |
|
|
| T |
6519244 |
agctctgct |
6519236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 670
Target Start/End: Original strand, 6736885 - 6736945
Alignment:
| Q |
610 |
atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttcatctctgct |
670 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||||||||| ||||||||| |
|
|
| T |
6736885 |
atgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct |
6736945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 503
Target Start/End: Complemental strand, 6838222 - 6838145
Alignment:
| Q |
426 |
ccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaa |
503 |
Q |
| |
|
||||||||| ||||||| ||| ||||| ||||||| ||| | |||||||| |||||||||||||||| || ||||| |
|
|
| T |
6838222 |
ccttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggattagtgatagctgaaa |
6838145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 44 - 273
Target Start/End: Complemental strand, 7189 - 6960
Alignment:
| Q |
44 |
agttgatattggagtagattgaactcttcagcatctgttgaagagtgaaatgagctcataattgctttggtgagtccaacaacatcaaaagtttctgaaa |
143 |
Q |
| |
|
||||||| ||||||| |||| || |||||| |||||| ||||| | |||||| | | |||||||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
7189 |
agttgatgttggagttgattcaagtcttcaccatctgctgaaggattaaatgacttgagaattgctttggtgagtccaaaaacatcgaaagattctgaaa |
7090 |
T |
|
| Q |
144 |
catagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactat |
243 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||| ||| ||| ||||||||||||| |||||| ||||| || ||||| || || | ||||||||| |
|
|
| T |
7089 |
catagacccatgctttaagttcaaaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactat |
6990 |
T |
|
| Q |
244 |
gctgattattggtacatggttgccactgtc |
273 |
Q |
| |
|
|||||||||||| || |||||||||||||| |
|
|
| T |
6989 |
gctgattattggaacctggttgccactgtc |
6960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 562 - 670
Target Start/End: Complemental strand, 6659 - 6551
Alignment:
| Q |
562 |
tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttc |
661 |
Q |
| |
|
||||||||| | |||||||||||| || ||||| ||||||| || ||||||||| |||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
6659 |
tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt |
6560 |
T |
|
| Q |
662 |
atctctgct |
670 |
Q |
| |
|
||||||||| |
|
|
| T |
6559 |
atctctgct |
6551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 103 - 366
Target Start/End: Complemental strand, 6572951 - 6572688
Alignment:
| Q |
103 |
aattgctttggtgagtccaacaacatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagc |
202 |
Q |
| |
|
||||| |||||||||||||||| ||||||| | || ||| |||| ||||||||||||||| ||||| || | || |||||| ||||| ||||| |||||| |
|
|
| T |
6572951 |
aattgttttggtgagtccaacagcatcaaatgattttgagacatggacccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagc |
6572852 |
T |
|
| Q |
203 |
tgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaact |
302 |
Q |
| |
|
|||||||| |||||||| ||||| ||||| | |||||||||||||||||||| ||| |||||| | ||||| ||| || || ||| ||||||| | |
|
|
| T |
6572851 |
tgagcaagggtggtcttccccatcccacccaaacccactatgctgattattgatacttggttgtcgttgtctttgtatgaaagcaaatggttgattattt |
6572752 |
T |
|
| Q |
303 |
cctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatgtagttggcaatct |
366 |
Q |
| |
|
| || || ||||| |||||||||||||||| ||| |||||||| ||||| ||||||| |||| |
|
|
| T |
6572751 |
cttctttctcaccctctctaccatatatgcaagatttatccaccagagatgcagttggcgatct |
6572688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 35140017 - 35139943
Alignment:
| Q |
127 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaag |
201 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||| |||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
35140017 |
atcaaaagattcagaaacatggacccaagctttaaattcaaactgctcatgtatcctatggtcattgtaaacaag |
35139943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 657
Target Start/End: Complemental strand, 41068463 - 41068416
Alignment:
| Q |
610 |
atgtttaagatcatcaagccacttcttcacgtacatgctttggtactg |
657 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
41068463 |
atgtttaagttcatcaagccaattcttcacatatatgctttggtactg |
41068416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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