View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7316_low_6 (Length: 472)
Name: NF7316_low_6
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 9026406 - 9026870
Alignment:
| Q |
16 |
tattctcgcatttacactatgacaaccacattgtgcgtacaattatatcatatgattttttgtgtgcaccttggtattttcttatcatatttgatcttta |
115 |
Q |
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| T |
9026406 |
tattctcgcatttacactatgacaaccacattgtgcgtacaattatatcatatgattttttgtgtgcaccttggtattttcttatcatatttgatcttta |
9026505 |
T |
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| Q |
116 |
tattatatccttgccctcccatattatcaagctcacattattttaatatgactatagctttttattagatat------gcatatgcagataagtatatat |
209 |
Q |
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| T |
9026506 |
tatcatatccttgccctcccatattatcaagctcacattattttaatatgactatagctttttattagatatgcatatgcatatgcagataagtatatat |
9026605 |
T |
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| Q |
210 |
aatttcatattgatactaagcaaacaaaacaagaaaaaatattggtgcccttaaaaaacggagacttgtgtaggctcccctccaacacactctaagggcc |
309 |
Q |
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| T |
9026606 |
aatttcatattgatactaagcaaacaaaacaataaaaaatattggtgcccttaaaaaacggagacttgtgtaggctcccctccaacacactctaagggcc |
9026705 |
T |
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| Q |
310 |
acttggtaaccacaaaccctctggttgaaatgtagccaagcaagcactgtataattgtcctttgtatacagttatagcactatactac-gtccaaatctt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9026706 |
acttggtaaccacaaaccctctggttgaaatgtagccaagcaagcactgtataattgtcctttgtatacagttatagcactatactactgtccaaatctt |
9026805 |
T |
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| Q |
409 |
tgactattatgtctttatttcaactgcatgccctaatctataacacacgacataa-aaaacaaaa |
472 |
Q |
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| T |
9026806 |
tgactattatgtctttatttcaactgcatgccctaatctataacacacgacataacaaaacaaaa |
9026870 |
T |
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