View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7316_low_7 (Length: 446)
Name: NF7316_low_7
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 28442383 - 28442801
Alignment:
| Q |
18 |
ttctccatttcaattttagcttccatatggttaagccaatgttatttttgttcttcgtcacacttcatctatcaataacttcaggtacacttgcacacaa |
117 |
Q |
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| T |
28442383 |
ttctccatttcaattttagcttccatatggttaagccaatgtcatttttgttcttcgtcacatttcatctatcaataacttcaggtacacttgcacacaa |
28442482 |
T |
|
| Q |
118 |
attaaatacatatcataatctttctcttcacttcttctaattattcaatgttcaatgtctaagttatctttt-ttctattttgcagtggtatttgcagcg |
216 |
Q |
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| T |
28442483 |
attaaatacatatcataatctttctcttcacttcttctaattattcaatgttcaatgtctaagttatctttttttctattttgcagtggtatttgcagcg |
28442582 |
T |
|
| Q |
217 |
gaattcactataattaacaattgcaactatacggtttggccagcttcatatactactggtggaaacagtggaaatgcaacattagcaaccacaggattca |
316 |
Q |
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| T |
28442583 |
gaattcactataattaacaactgcaactatacggtttggccagcttcatatactacaggtggaaatagtgaaaatgcaacattaccaaccacaggattca |
28442682 |
T |
|
| Q |
317 |
tgttaaaatccggtgacaatttgacaatcacaacacctgccaaatggattggtcgtttctggggacggactctctgtacaacagactctgtctccaaaaa |
416 |
Q |
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| T |
28442683 |
tgttaaaacccggtgacaatttgacaatcacaacacctgccaaatggactggtcgtttctggggaaggactctttgcacaacagactccgtctccaaaaa |
28442782 |
T |
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| Q |
417 |
cttctcatgtgtcacaggt |
435 |
Q |
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| T |
28442783 |
cttctcatgtgtcacaggt |
28442801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 431
Target Start/End: Original strand, 28483582 - 28483809
Alignment:
| Q |
198 |
tgcagtggtatttgcagcggaattcactataattaacaattgcaactatacggtttggccagcttcatatactactggtggaaacagtggaaatgcaaca |
297 |
Q |
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|||||||||| || ||| ||||||||||||| |||||||||||||||| || || ||||||||||||| ||||||| | ||||||||||||||| |
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| T |
28483582 |
tgcagtggtaatttcaggggaattcactatagttaacaattgcaactacacagtgtggccagcttcatctactact------actagtggaaatgcaaca |
28483675 |
T |
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| Q |
298 |
ttagcaaccacaggattcatgttaaaatccggtgacaatttgacaatcacaacacctgccaaatggattggtcgtttctggggacggactctctgtacaa |
397 |
Q |
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| T |
28483676 |
ctcgcaaccactggattcattttaaaacctggtgaaaattccacaatcacagcacctcctgactgggcggggcgtttctggggacggactctctgtacaa |
28483775 |
T |
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| Q |
398 |
cagactctgtctccaaaaacttctcatgtgtcac |
431 |
Q |
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| T |
28483776 |
cgaattccatctccagaaacttctcctgcgtcac |
28483809 |
T |
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