View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7316_low_8 (Length: 437)
Name: NF7316_low_8
Description: NF7316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7316_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 144 - 308
Target Start/End: Original strand, 6033102 - 6033266
Alignment:
| Q |
144 |
ctcaaagatctgccaagggcatgtgacagtttggcttcaaaggatttatatgctgcgtgtattatttctagccaatatttaaagtgtggttgatgttata |
243 |
Q |
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| T |
6033102 |
ctcaaagatctgccaagggcatgtgacagtttggcttcaaaggatttatatgctgcgtgtattatttctagccaatatttaaagtgtggttgatgttata |
6033201 |
T |
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| Q |
244 |
ttatataaattaaagttcaactatatttctagcagatccaatataatttacatagttttaattag |
308 |
Q |
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| T |
6033202 |
ttatataaattaaagttcaactatatttctagcagatccaatataatttacatagttttaattag |
6033266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 6032958 - 6033069
Alignment:
| Q |
1 |
cataacaatgaatgattctaaaagtgctgttacaaagaatcgttttcatatggagacatttcattttctgttctattttgccctttagacaatgtctgta |
100 |
Q |
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| T |
6032958 |
cataagaatgaattattctaaaagtgcttttacaaagaatcgttttcatatggagacatttcattttctgttctatttttccctttagacaatgtctgta |
6033057 |
T |
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| Q |
101 |
ttctgtactaaa |
112 |
Q |
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| T |
6033058 |
ttctgtactaaa |
6033069 |
T |
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