View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_high_14 (Length: 422)
Name: NF7317_high_14
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 47119898 - 47120292
Alignment:
| Q |
13 |
aatatcgatctctttctaatggaaaaatgtggtttctcacaatccaaagcctccaccctgagggttgaactctttaaatcccacggtagcaccctcgccg |
112 |
Q |
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| T |
47119898 |
aatatcgatctctttctaatggaaaaatgtggtttctcacaatccaaagcctccaccctgagggttgaactctttaaatcccacggtagcaccctcgccg |
47119997 |
T |
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| Q |
113 |
gtttacgcgcactaggctatgatatcaccgccgaagaataccacgggtaactaattagcttatgcataatcacaatgaatcatcgtgattttgacataca |
212 |
Q |
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| T |
47119998 |
gtttacgcgcactaggctatgatatcaccgccgaagaataccacgggtaact---tagcttatgcataatcacagtggatcattgtgattttgacataca |
47120094 |
T |
|
| Q |
213 |
cttaatttaatttaaaca-----taactactttgtattttactccaaagtagcatgatgctaattaagttttcgttcttcttagtttcgtgcacggaagg |
307 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47120095 |
cttaatttaatttaaacataacataactactttgtattttactccaaagtagcatgatgctaattaagttttcgttcttcttagtttcgtgcacggaagg |
47120194 |
T |
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| Q |
308 |
ctaccttacgaattaatcaaaccagacattcagttacggaacctcttacgttccatcaaccaaaggaagattgtatgtccattttctaatcttaattt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47120195 |
ctaccttacgaattaatcaaaccagacattcagttacggaacctcttacgttccatcaaccaaaggaagattgtatgtccattttctaatcttaattt |
47120292 |
T |
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