View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_high_18 (Length: 361)
Name: NF7317_high_18
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 5666335 - 5665997
Alignment:
| Q |
18 |
cactcagcaaaatcgtgaatctcttgttgtgtaactggattcccattcaacctaccatcgaccaacaagacattattgaagtctcctccaagtagaaaat |
117 |
Q |
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| T |
5666335 |
cactcagcaaaatcgtgaatctcttgttgtgtaactggattcccattcaacctaccatcgaccaacaagacattattgaagtctcctccaagtagaaaat |
5666236 |
T |
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| Q |
118 |
ttccagaaattttgttgcaggtatcttcaatgagccagatctcctttctttgttcctgagtgttgaaagcatacatacacgacaactaaatggaaacaaa |
217 |
Q |
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| T |
5666235 |
ttccagaaattttgttgcaggtatcttcaatgagccagatctcctttctttgttcctgagtgttgaaagcatacatacacgacaactaaatggaaacaaa |
5666136 |
T |
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| Q |
218 |
cacaagaatgaaggctcaccacttcacaactagatacagctttgatatcccacattctagggttccaagcaacccacattctcccatttggggaaacatc |
317 |
Q |
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| T |
5666135 |
cacaagaatgaaggctcaccacttcacaactagatacagctttgatatcccacattctagggttccaagcaacccacattctcccatttggggaaacatc |
5666036 |
T |
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| Q |
318 |
ctaattattaatgacagcccagtctataaacaccaaact |
356 |
Q |
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| T |
5666035 |
ctaattattaatgacagcccagtctataaacatcaaact |
5665997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 40950909 - 40950836
Alignment:
| Q |
24 |
gcaaaatcgtgaatctcttgttgtgtaactggattcccattcaacctaccatcgaccaacaagacattattgaa |
97 |
Q |
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| T |
40950909 |
gcaaaatcttgaatttcctgttgagtaaccagattaccattcaacctatcatcaaccaacaatacactattgaa |
40950836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 27186957 - 27186990
Alignment:
| Q |
25 |
caaaatcgtgaatctcttgttgtgtaactggatt |
58 |
Q |
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| T |
27186957 |
caaaatcgtgaatctcttgttgtgtaactagatt |
27186990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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