View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_high_20 (Length: 331)
Name: NF7317_high_20
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 40286799 - 40286486
Alignment:
| Q |
1 |
ataaaaagacagaaagtgcatcacttatacaaatatgcagtcacagattttgctttgaatttggagtttttgttcaatcaacgttcattgattaatgaaa |
100 |
Q |
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| T |
40286799 |
ataaaaagacagaaagtgcatcacttataaaaatatgcagtcacagattttgctttgaatttggagtttttgttcaatcaacgttcattgattaatgaaa |
40286700 |
T |
|
| Q |
101 |
atcatgcattcaaaaacaagtagaagaatttattcgcgaagaatctagaatgacaatcttctcagcatgagcataattccttaactgatggattcctctc |
200 |
Q |
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| T |
40286699 |
atcatgcattcaaaaacaagtagaagaatttattcgcgaagaatctagaatgacaatcttctcagcatgagcataattccttaactgatggattcctctc |
40286600 |
T |
|
| Q |
201 |
agttcccccttcctattcatgaatgttctaatctttacaatttcagtgaacagtcgttggaaacacgacttgttatattgcaagcatataacttgccatg |
300 |
Q |
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| T |
40286599 |
agttcccccttcctaatcatgaacgttataatctttacaattttagtgaacagccgttggaaacacgacttgttgtattgcaagcatataacttgccatg |
40286500 |
T |
|
| Q |
301 |
agctaccttaatat |
314 |
Q |
| |
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|||||||||||||| |
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| T |
40286499 |
agctaccttaatat |
40286486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 29 - 314
Target Start/End: Original strand, 40455989 - 40456274
Alignment:
| Q |
29 |
acaaatatgcagtcacagattttgctttgaatttggagtttttgttcaatcaacgttcattgattaatgaaaatcatgcattcaaaaacaagtagaagaa |
128 |
Q |
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||||||||||||| | |||||||| |||||||||||||||||||||| |||||| ||||||||| ||| |||||||| ||| |||||||||||||||||| |
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| T |
40455989 |
acaaatatgcagtaaaagattttgttttgaatttggagtttttgttccatcaacattcattgatcaatcaaaatcatacatccaaaaacaagtagaagaa |
40456088 |
T |
|
| Q |
129 |
tttattcgcgaagaatctagaatgacaatcttctcagcatgagcataattccttaactgatggattcctctcagttcccccttcctattcatgaatgttc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40456089 |
tttattcgcgaagaatctagaatgacaatcttctcagcatgagcataattccttaactgatggattcctctcagttcccccttcctattcatgaacgtta |
40456188 |
T |
|
| Q |
229 |
taatctttacaatttcagtgaacagtcgttggaaacacgacttgttatattgcaagcatataacttgccatgagctaccttaatat |
314 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40456189 |
taatctttacaattttagtgaacagccgttggaaacacgacttgttgtattgcaagcatataacttgccatgagctaccttaatat |
40456274 |
T |
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