View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_high_24 (Length: 284)
Name: NF7317_high_24
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 154 - 276
Target Start/End: Original strand, 2859834 - 2859956
Alignment:
| Q |
154 |
ctgaaatcaatccaatctaaaataatgtatcacagcattctcctcaatcaactctagtctagaaccaattcttgtttatctttccctgccaccagttgag |
253 |
Q |
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| T |
2859834 |
ctgaaatcaatccaatctaaattaatgtatgacaccattctcctcattcaactctagtctagagccaattcttgtttatctttccctgccaccagttgag |
2859933 |
T |
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| Q |
254 |
ctttctcaccctttttctctgct |
276 |
Q |
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|||||||||||||||||| |||| |
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| T |
2859934 |
ctttctcaccctttttctttgct |
2859956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 2865274 - 2865341
Alignment:
| Q |
209 |
agtctagaaccaattcttgtttatctttccctgccaccagttgagctttctcaccctttttctctgct |
276 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2865274 |
agtcttgagccaattcttgtttatctttccctgccaccagttgagctttctcaccctttttctttgct |
2865341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 2859695 - 2859761
Alignment:
| Q |
18 |
aattcagactaaattccctcaacataccagcagcaaacatgaacataa-tcataactatggctttat |
83 |
Q |
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| T |
2859695 |
aattcagactaaattccctcaacataccagcagcaaacatgaacctaattcataactatggctttat |
2859761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 2884473 - 2884531
Alignment:
| Q |
218 |
ccaattcttgtttatctttccctgccaccagttgagctttctcaccctttttctctgct |
276 |
Q |
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| T |
2884473 |
ccaattcttgtttatctttccctgccaccagttgagctttctcaccgtttttctttgct |
2884531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 2864782 - 2864832
Alignment:
| Q |
154 |
ctgaaatcaatccaatctaaaataatgtatcacagcattctcctcaatcaa |
204 |
Q |
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|
||||||||||||||||||||| |||||||| |||||||||||| ||||||| |
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| T |
2864782 |
ctgaaatcaatccaatctaaattaatgtatgacagcattctccccaatcaa |
2864832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 2883994 - 2884044
Alignment:
| Q |
154 |
ctgaaatcaatccaatctaaaataatgtatcacagcattctcctcaatcaa |
204 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||| ||||||| |
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| T |
2883994 |
ctgaaatcaatccaatctaaattaatgtaggacagcattctccccaatcaa |
2884044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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