View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_high_30 (Length: 219)
Name: NF7317_high_30
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 13872325 - 13872154
Alignment:
| Q |
28 |
gtcctgtaaagattatctatgactaagggtgagtcgaggcttctacggcctagaaagcttcctgcaaagattgatcgcaggcgtcacaagatataggctt |
127 |
Q |
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| T |
13872325 |
gtcctgtaaagattatctatgactaagggtgagtcgaggcttctacggcctagaaagcttcctgcaaagattgatcgcaggcgtcacaagatataggctt |
13872226 |
T |
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| Q |
128 |
cgccacaaatagtccaagataccacaccacttatccaggctataacacaactgattcagactttacccatga |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13872225 |
cgccacaaatagtccaaggtaccacaccacttatccaggctataccacaactgattcagactttacccatga |
13872154 |
T |
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Target: chr2; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 14012450 - 14012279
Alignment:
| Q |
28 |
gtcctgtaaagattatctatgactaagggtgagtcgaggcttctacggcctagaaagcttcctgcaaagattgatcgcaggcgtcacaagatataggctt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14012450 |
gtcctgtaaagattatctatgactaagggtgagtcgaggcttctacggcctagaaagcttcctgcaaagattgatcgcaggcgtcacaagatataggctt |
14012351 |
T |
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| Q |
128 |
cgccacaaatagtccaagataccacaccacttatccaggctataacacaactgattcagactttacccatga |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14012350 |
cgccacaaatagtccaaggtaccacaccacttatccaggctataccacaactgattcagactttacccatga |
14012279 |
T |
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