View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7317_high_33 (Length: 210)

Name: NF7317_high_33
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7317_high_33
NF7317_high_33
[»] chr2 (13 HSPs)
chr2 (14-186)||(10372259-10372431)
chr2 (19-120)||(10353515-10353616)
chr2 (19-175)||(10348185-10348341)
chr2 (56-120)||(9321407-9321471)
chr2 (61-123)||(9329035-9329097)
chr2 (56-118)||(9357614-9357676)
chr2 (56-119)||(10336275-10336338)
chr2 (56-112)||(9283833-9283889)
chr2 (56-118)||(9292359-9292421)
chr2 (61-118)||(9060772-9060829)
chr2 (61-114)||(9274948-9275001)
chr2 (146-186)||(9275051-9275091)
chr2 (146-186)||(9283750-9283790)
[»] chr4 (1 HSPs)
chr4 (19-120)||(26575267-26575368)
[»] chr3 (1 HSPs)
chr3 (56-120)||(37462929-37462993)
[»] scaffold0667 (1 HSPs)
scaffold0667 (63-123)||(4921-4981)
[»] chr1 (1 HSPs)
chr1 (56-117)||(29452951-29453012)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 10372259 - 10372431
Alignment:
Q  14 gaacctgtggatcataaaaagtgctttggtggtcgattaagtaagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaac 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10372259 gaacatgtggatcataaaaagtgctttggtggtcgattaagtaagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaac 10372358  T
Q  114 acataaggaggctttgattgtggggtcaagaataggaataggaagagggagaaaagggataaccctatgttta 186  Q
     |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372359 gcataaggaggctctgattgtggggtcaagaataggaataggaagagggagaaaagggataaccctatgttta 10372431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 10353515 - 10353616
Alignment:
Q  19 tgtggatcataaaaagtgctttggtggtcgattaagtaagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacata 118  Q
    |||||||||||||||| | ||||  | ||||  |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  10353515 tgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcata 10353614  T
Q  119 ag 120  Q
    ||    
T  10353615 ag 10353616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 10348185 - 10348341
Alignment:
Q  19 tgtggatcataaaaagtgctttggtggtcgattaagtaagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacata 118  Q
    |||||||||||||||| | | ||  | |||| ||||| ||| |||||||||||||||||||| |||||||    ||||||||||||||| ||||| ||||    
T  10348185 tgtggatcataaaaagggttctgtagatcgagtaagtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 10348284  T
Q  119 aggaggctttgattgt-ggggtcaagaataggaataggaagagggagaaaagggataa 175  Q
    |||||  |||| | || |  || |||||||||||||||||||||||||||||||||||    
T  10348285 aggagcatttg-tcgtcgtagttaagaataggaataggaagagggagaaaagggataa 10348341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 9321407 - 9321471
Alignment:
Q  56 aagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataag 120  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||||    
T  9321407 aagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcataag 9321471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 9329035 - 9329097
Alignment:
Q  61 attctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataaggag 123  Q
    |||||||||||||||||||| |||||||||| |||||||||||| || ||||| |||||||||    
T  9329035 attctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggag 9329097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 9357614 - 9357676
Alignment:
Q  56 aagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacata 118  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||    
T  9357614 aagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 9357676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 10336275 - 10336338
Alignment:
Q  56 aagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataa 119  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||||||| || ||||| |||||    
T  10336275 aagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcataa 10336338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 9283889 - 9283833
Alignment:
Q  56 aagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaa 112  Q
    |||| |||| |||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  9283889 aagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 9283833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 9292359 - 9292421
Alignment:
Q  56 aagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacata 118  Q
    |||| ||||||||||||||||||||||||| ||| | |||| |||||||||| ||||| ||||    
T  9292359 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 9292421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 9060829 - 9060772
Alignment:
Q  61 attctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacata 118  Q
    ||||||||||||||||||||| |||  || | ||||||||||||||| ||||| ||||    
T  9060829 attctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcata 9060772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 9274948 - 9275001
Alignment:
Q  61 attctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaaca 114  Q
    |||||||| ||||| |||||||||||||||| ||||||||| || || ||||||    
T  9274948 attctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaaca 9275001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 9275051 - 9275091
Alignment:
Q  146 taggaataggaagagggagaaaagggataaccctatgttta 186  Q
    |||| ||||||||||||||||||||||||| || |||||||    
T  9275051 taggtataggaagagggagaaaagggataatccgatgttta 9275091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 9283790 - 9283750
Alignment:
Q  146 taggaataggaagagggagaaaagggataaccctatgttta 186  Q
    |||| ||||||||||||||||||||||||| || |||||||    
T  9283790 tagggataggaagagggagaaaagggataatccaatgttta 9283750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 26575267 - 26575368
Alignment:
Q  19 tgtggatcataaaaagtgctttggtggtcgattaagtaagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacata 118  Q
    |||||||||||||||| | ||||  | ||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  26575267 tgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcata 26575366  T
Q  119 ag 120  Q
    ||    
T  26575367 ag 26575368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 37462929 - 37462993
Alignment:
Q  56 aagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataag 120  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  37462929 aagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataag 37462993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 4921 - 4981
Alignment:
Q  63 tctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataaggag 123  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||| ||||| |||||||||    
T  4921 tctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggag 4981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 29453012 - 29452951
Alignment:
Q  56 aagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacat 117  Q
    |||| ||||||||||||||||||||| ||  ||| | ||||||||| ||||| |||||||||    
T  29453012 aagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaacacat 29452951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University