View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_high_6 (Length: 540)
Name: NF7317_high_6
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_high_6 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 21 - 540
Target Start/End: Original strand, 17656312 - 17656837
Alignment:
| Q |
21 |
tgggtactgacagtcaagggccaaccgagaatcgtgcaagtcctggcagcctgagtcctgatattgtaattaaattattttaaaatatatttatgggtgg |
120 |
Q |
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| T |
17656312 |
tgggtactgacagtcaagggccaaccgagaaccgtgcaagtcccggcagcctgagtcctgatattgtaattaaattattttaaaatatatttatgggtgg |
17656411 |
T |
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| Q |
121 |
aatgagatatccatccatataaatatt--aattgatagattaatagatggtttcagttaaaccatcataatccaatcgannnnnnnngtaaatcgtctat |
218 |
Q |
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| T |
17656412 |
aatg-gatatccatccatataaatattgtaattgatagattaatagatggtttcagttaaaccatcataatccaatcgaatttttttgtaaatcatctat |
17656510 |
T |
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| Q |
219 |
ttccctaatacaagcaatcaaccgaaccgaagttaaatattcaaaattgaattgatccggtgtnnnnnnnnnnt----gaagcaatagttacagttcaga |
314 |
Q |
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| T |
17656511 |
ttccctaatacaagaaatcaaccaaaccgaagtgaaatattcaaaattgaattgatccagtgtaaaaaaaaaaaaaaagaagcaatagttacagttcaga |
17656610 |
T |
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| Q |
315 |
-ctcaaggcaaattagagaaagtaatttagtagttacttgattgaagatagtcgctttgaaatcagctttctcaaacatggattggaggcttggagcttg |
413 |
Q |
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| T |
17656611 |
actcaaggcaaattagagaaagtaatttagtagttacttgattgaagatagtcgctttgaaatcagctttctcaaacacggattggaggcttggagcttg |
17656710 |
T |
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| Q |
414 |
tgaaaaagaactcctatcatgtaactgatatacaacagattcatggtgcagtaaattcttgcttcctattataagagtgaaaaggttcaatatgttgaca |
513 |
Q |
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| T |
17656711 |
tgaaaaagaactcctatcatgtaactgatatacaacagattcatggtgcagtaaattcttgcttcctattataagagtgaaaaggttcaatatgttgaca |
17656810 |
T |
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| Q |
514 |
acctcttggaagacttcgatgaaagtt |
540 |
Q |
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| T |
17656811 |
acctcttggaagacttcgatgaaagtt |
17656837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 147 - 483
Target Start/End: Original strand, 17729881 - 17730219
Alignment:
| Q |
147 |
taattgatagattaatagatggtttcagttaaaccatcataatccaatcgannnnnnnngtaaatcgtctatttccctaatacaagcaatcaaccgaacc |
246 |
Q |
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| T |
17729881 |
taattgatagattaattgattgtttcagttaaaccatcataatccaatcgaaaaattatgtaaataatctatttccctaatacaagaaatcagcctaact |
17729980 |
T |
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| Q |
247 |
gaagttaaatattcaaaattgaattgatccggtgtnnnnnnnnnntgaagcaatagttacagttcagactcaaggcaaattagagaaagtaatttagtag |
346 |
Q |
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| T |
17729981 |
ggagtgaaatattcaaaattgaattgatccagtgttagaaaaacaata-gcaataattacagttcagactcgagtcaagttagagaaagtaatttaatag |
17730079 |
T |
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| Q |
347 |
ttacttg---attgaagatagtcgctttgaaatcagctttctcaaacatggattggaggcttggagcttgtgaaaaagaactcctatcatgtaactgata |
443 |
Q |
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| T |
17730080 |
ttacttgttgattgaagatagtcgctttgacatcaactttctcaagcacagattggaggctttgagcttgtgaaaaagcactactatcatataacagata |
17730179 |
T |
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| Q |
444 |
tacaacagattcatggtgcagtaaattcttgcttcctatt |
483 |
Q |
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| T |
17730180 |
tacaacagattcatggtgcggtaaatttttgcttcctatt |
17730219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 17729802 - 17729876
Alignment:
| Q |
31 |
cagtcaagggccaaccgagaatcgtgcaagtcctggcagcctgagtcctgatattgtaattaaattattttaaaa |
105 |
Q |
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| T |
17729802 |
cagtcaagggctagccgagaaccgtgcaagtcccggcagcctgagtcctgatattgtaattaaattattttaaaa |
17729876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 491 - 540
Target Start/End: Original strand, 17730275 - 17730324
Alignment:
| Q |
491 |
tgaaaaggttcaatatgttgacaacctcttggaagacttcgatgaaagtt |
540 |
Q |
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| T |
17730275 |
tgaaaatgttcaatatgttgacaacctcttggaagacttcgatgaaagtt |
17730324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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