View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_low_11 (Length: 455)
Name: NF7317_low_11
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 202 - 411
Target Start/End: Complemental strand, 34332624 - 34332410
Alignment:
| Q |
202 |
cattggacgttgacgttgaacaatcataattaaacaccgcactttaatccaaaatcttaagacattaaattta-----catgtcacttataaagtgttaa |
296 |
Q |
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| T |
34332624 |
cattggacgttgacgttgaacaatcataattaaacacccca-tttgatccaaaatcttaagacattaaatttataagtcatgtcacttataaagtgttta |
34332526 |
T |
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| Q |
297 |
aggtaattttctactcaatatatgatattttagtcacacatgat-taccaaacta-tttttatgatgtaattaataattttagtgagttaagatcctctc |
394 |
Q |
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| T |
34332525 |
aagtacttttctactcaatatataatattttagtcacacataatataccaaactattttttatgatgtaattaataattttag-gagttaagatcctccc |
34332427 |
T |
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| Q |
395 |
cactttttctatttact |
411 |
Q |
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| T |
34332426 |
cattttttctatttact |
34332410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 34332665 - 34332604
Alignment:
| Q |
16 |
atcatgtcctacctattctataataatcacatcacattggtcattggacattgtcgttgaac |
77 |
Q |
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| T |
34332665 |
atcatgtcctacctattctataataatcacatcacattggtcattggacgttgacgttgaac |
34332604 |
T |
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