View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_low_14 (Length: 426)
Name: NF7317_low_14
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 263 - 393
Target Start/End: Original strand, 3302187 - 3302317
Alignment:
| Q |
263 |
ctatgatcaaattatgtaatgtattaacagaagtaaaatcaactatatgaataagctatgaatcgaagataagaaacgaaatcgaaatgttaccttgaag |
362 |
Q |
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| T |
3302187 |
ctatgatcaaattatgtaatgtattaacagaagtaaaatcaactatatgaataagctatgaatcgaagataagaaacgaaatcgaaatgttaccttgaag |
3302286 |
T |
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| Q |
363 |
gaagaagagcagagaggaacgctagggtttt |
393 |
Q |
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| T |
3302287 |
gaagaagagcagagaggaacgccagggtttt |
3302317 |
T |
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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 3301933 - 3302026
Alignment:
| Q |
7 |
tttggtggtttactccaaaaagaatatcgatattcacatgttcatgtatgttaagtatatatgcatcaaatatgaacatacaaaaccctaaatg |
100 |
Q |
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| T |
3301933 |
tttggtggtttactccaaaaagaatattgatattcacatgttcatgtatgttaagtatatatgcatcaaatatgaacatacaaaaccctaaatg |
3302026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 3302082 - 3302147
Alignment:
| Q |
155 |
gatcattacataattttggattcagaattgcgatttaacgtgtacataaacacaagatatagcttc |
220 |
Q |
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| T |
3302082 |
gatcattacataattttggattcagaattgcgatttaacgtgtacataaacacaggatatagcttc |
3302147 |
T |
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