View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7317_low_2 (Length: 706)

Name: NF7317_low_2
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7317_low_2
NF7317_low_2
[»] chr3 (1 HSPs)
chr3 (19-685)||(51727903-51728551)


Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 19 - 685
Target Start/End: Complemental strand, 51728551 - 51727903
Alignment:
Q  19 gtttagaaatttaaaaagcaattaattaattaaaaacatgatgaatgaatgtatatatatacccacccttgcttaaagagatcaagattgtgaaatctat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728551 gtttagaaatttaaaaagcaattaattaattaaaaacatgatgaatgaatgtatatatatacccacccttgcttaaagagatcaagattgtgaaatctat 51728452  T
Q  119 gaagatatacggcaatttcctgaacagtttccaacattacattacatcacattgggcaacctttttaagattcaacattcgaacaaaactcagcaataat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51728451 gaagatatacggcaatttcctgaacagtttccaacattacattacatcacattgagcaacctttttaagattcaacattcgaacaaaactcagcaataat 51728352  T
Q  219 gaatttgattagaaattctgaaaggaaaaaatgaaaatctggaaggggttctattctaattattatgagaatgtaacaaaattggaattgagaatgcata 318  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51728351 gaatttgattagaaattatgaaaggaaaaaatgaaaatctggaaggggttctattctaattattatgagaatgtaacaaaattggaattgagaatgcata 51728252  T
Q  319 gtgtgggttgaaccaatctccaattgcatgtcccattttggttggaattccaaccannnnnnnnnnnctttctcacctacgtgtgttaaattcaatgtac 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |            ||||| ||||||||||||||||||||||||||    
T  51728251 gtgtgggttgaaccaatctccaattgcatgtcccattttggttggaattccaacgaatttttt-----tttctaacctacgtgtgttaaattcaatgtac 51728157  T
Q  419 tactgtcatcaattttctatatttacctcaactctactctatcattcattttggttcacagttaatccttccatatccattacttggacagggagtttaa 518  Q
    |||||   ||||||||||||||||||||||      |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |         
T  51728156 tactg---tcaattttctatatttacctca-----tctctatcattcattttggttcacagttaatccctccatatccattacttggacaggggg----- 51728070  T
Q  519 tttaatggttcggtttttagtaaaaaataaataaatatccaagtttaacaaatctacatcgatttgtctagaaatccaagcttagaggacaaatgctgtt 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51728069 tttaatggttcggtttttagtaaaaaataaataaatatccaagtttaacaaatctacatcgatttgtctagaaatcctagcttagaggacaaatgctgtt 51727970  T
Q  619 cacgagctttgtcaaaaatagtaaaaatacatatctactcgaagatacattgttcacgagctttcaa 685  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51727969 cacgagctttgtcaaaaatagtaaaaatacatatctactccaagatacattgttcacgagctttcaa 51727903  T

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