View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7317_low_22 (Length: 308)
Name: NF7317_low_22
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 37416918 - 37416626
Alignment:
| Q |
1 |
ttggtaatgaaatttgtgcaagtcttgtctgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37416918 |
ttggtaatgaaatttgtgcaagtcttgtatgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaat |
37416819 |
T |
|
| Q |
101 |
gccttgtggacattggattgtactttcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37416818 |
gccttgtggacattggattgtactttcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacac |
37416719 |
T |
|
| Q |
201 |
accatttgcaaatttattagctgactcatgacatgctagaacacttgggaacattggaatatctgtaaatgctcgttactcttgcacattcat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
37416718 |
accatttgcaaatttattagctgactcatgacatgctagaacacttgggaacattggaatatcagtaaatgcttgttactcttgcacattcat |
37416626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 37424450 - 37424158
Alignment:
| Q |
1 |
ttggtaatgaaatttgtgcaagtcttgtctgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37424450 |
ttggtaatgaaatttgtgcaagtcttgtatgcatctaagaaaaatggtctttatcatgctaaagattccatcttggtgggtataactgaatttgaaaaat |
37424351 |
T |
|
| Q |
101 |
gccttgtggacattggattgtactttcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37424350 |
gccttgtggacattggattgtactttcaaaattggttatgtagagacaataaagttggttgtttctacacttgcttccattctatagatgctcttcacac |
37424251 |
T |
|
| Q |
201 |
accatttgcaaatttattagctgactcatgacatgctagaacacttgggaacattggaatatctgtaaatgctcgttactcttgcacattcat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
37424250 |
accatttgcaaatttattagctgactcatgacatgctagaacacttgggaacattggaatatcagtaaatgcttgttactcttgcacattcat |
37424158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University